RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NKX3-1Q99801 234 aaPredicted RBP16.11■□□□□ 0.17
UPF1-209ENST00000600310 SSBP3Q9BWW4 388 aaPredicted RBP16.11■□□□□ 0.17
UPF1-209ENST00000600310 SMURF1Q9HCE7 757 aa16.11■□□□□ 0.17
UPF1-209ENST00000600310 RBFOX1Q9NWB1 397 aaKnown RBP16.11■□□□□ 0.17
UPF1-209ENST00000600310 ZNF222Q9UK12 451 aa16.11■□□□□ 0.17
UPF1-209ENST00000600310 FLNAP21333 2647 aaKnown RBP16.11■□□□□ 0.17
UPF1-209ENST00000600310 ABCA1O95477 2261 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 RFPL4AA6NLU0 287 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 KIAA1324LA8MWY0 1029 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 RFPL4AL1F8VTS6 287 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 SMIM18P0DKX4 95 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 ZNF16P17020 682 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 ADRA2CP18825 462 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 ZFP36P26651 326 aaKnown RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 OR3A4PP47883 348 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 NPY4RP50391 375 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 DVL1P1P54792 670 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 GNB2P62879 340 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 WDR25Q64LD2 544 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 PNLDC1Q8NA58 520 aaKnown RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 EMG1Q92979 244 aaKnown RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 SLITRK2Q9H156 845 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 LPAR2Q9HBW0 351 aa16.1■□□□□ 0.17
UPF1-209ENST00000600310 POLR3KQ9Y2Y1 108 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 ZNF469Q96JG9 3925 aaPredicted RBP16.1■□□□□ 0.17
UPF1-209ENST00000600310 VPS13CQ709C8 3753 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 TRAV20A0A0B4J274 112 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 NKX6-3A6NJ46 265 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 SFTPBP07988 381 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 PRDX2P32119 198 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 GABRA2P47869 451 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 FAM58AQ8N1B3 248 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 JAGN1Q8N5M9 183 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 CD177Q8N6Q3 437 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 TMEM186Q96B77 213 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 SDSLQ96GA7 329 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 MED30Q96HR3 178 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 GAFA1Q96PS6 74 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 UQCC2Q9BRT2 126 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 FAM192AQ9GZU8 254 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 CNTD2Q9H8S5 307 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 SEBOXQ9HB31 216 aaPredicted RBP16.09■□□□□ 0.17
UPF1-209ENST00000600310 HMG20AQ9NP66 347 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 CLN8Q9UBY8 286 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 STUB1Q9UNE7 303 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 CSPG4Q6UVK1 2322 aa16.09■□□□□ 0.17
UPF1-209ENST00000600310 A0A1B0GW55 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DVL1O14640 695 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 SIGLEC5O15389 551 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 PHF1O43189 567 aaPredicted RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 FCN3O75636 299 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 TFF1P04155 84 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L2P0CJ85 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L3P0CJ86 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L4P0CJ87 422 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L5P0CJ88 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L6P0CJ89 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L7P0CJ90 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 CD37P11049 281 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 CALRP27797 417 aaKnown RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 FGF9P31371 208 aaPredicted RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 IL13RA1P78552 427 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 LCN2P80188 198 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 ELP2Q6IA86 826 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 FAM166AQ6J272 317 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4L9Q6RFH8 374 aaPredicted RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 FIP1L1Q6UN15 594 aaKnown RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 GLCCI1Q86VQ1 547 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 FAM216BQ8N7L0 139 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 Q8NFD4 153 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 FOXRED1Q96CU9 486 aaPredicted RBP16.08■□□□□ 0.16
UPF1-209ENST00000600310 IL36GQ9NZH8 169 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 DUX4Q9UBX2 424 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 MAB21L2Q9Y586 359 aa16.08■□□□□ 0.16
UPF1-209ENST00000600310 MAP1AP78559 2803 aaPredicted RBP16.07■□□□□ 0.16
UPF1-209ENST00000600310 PPIAL4CA0A0B4J2A2 164 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 NDUFB3O43676 98 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 CDRT1O95170 752 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 CD36P16671 472 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 PRKACAP17612 351 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 MTNR1BP49286 362 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 BMXP51813 675 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 FGF12P61328 243 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 ZNF146Q15072 292 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 DGUOKQ16854 277 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 KRTAP21-3Q3LHN1 58 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 GLT8D1Q68CQ7 371 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 ELL3Q9HB65 397 aaPredicted RBP16.07■□□□□ 0.16
UPF1-209ENST00000600310 YAE1D1Q9NRH1 226 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 HIF1ANQ9NWT6 349 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 IL36RNQ9UBH0 155 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 OR14J1Q9UGF5 321 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 SSR3Q9UNL2 185 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 ING4Q9UNL4 249 aa16.07■□□□□ 0.16
UPF1-209ENST00000600310 TRAV1-2A0A0B4J238 106 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 A8MV72 311 aaPredicted RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 CALCBP10092 127 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 SELLP14151 372 aa16.06■□□□□ 0.16
UPF1-209ENST00000600310 CEBPDP49716 269 aaPredicted RBP16.06■□□□□ 0.16
UPF1-209ENST00000600310 RSU1Q15404 277 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms