RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 FAM90A22PA8MWA6 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A12PA8MX19 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A5PA8MXJ8 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A23PA8MXZ1 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 IFNL4K9M1U5 179 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A15PP0C7V4 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A13PP0C7W8 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A14PP0C7W9 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A24PP0C7X0 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 DANCRP0C864 163 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 GABRR1P24046 479 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 CFHR2P36980 270 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 MNDAP41218 407 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 PPP5CP53041 499 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 TAS2R20P59543 309 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 IL13RA2Q14627 380 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 ARL6IP1Q15041 203 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 C20orf204Q6ZNR8 217 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 ZNF826PQ6ZT77 177 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 C11orf53Q8IXP5 236 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM89BQ8N5H3 189 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 GDPD1Q8N9F7 314 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 CHST4Q8NCG5 386 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 OR10R2Q8NGX6 335 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 Q8TCH9 128 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 ZNF488Q96MN9 340 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 VRK1Q99986 396 aaPredicted RBP13.06□□□□□ -0.32
UPF1-206ENST00000598471 SOSTQ9BQB4 213 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 TRAF4Q9BUZ4 470 aaPredicted RBP13.06□□□□□ -0.32
UPF1-206ENST00000598471 CLEC4MQ9H2X3 399 aaPredicted RBP13.06□□□□□ -0.32
UPF1-206ENST00000598471 RASL12Q9NYN1 266 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 RNF7Q9UBF6 113 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 GLS2Q9UI32 602 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 ST3GAL6Q9Y274 331 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 MRPS7Q9Y2R9 242 aaKnown RBP13.06□□□□□ -0.32
UPF1-206ENST00000598471 TRAV18A0A075B6X5 111 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 A0A0G2JMP0 313 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 A0A0X1KG70 313 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 A0A1W2PPR1 153 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 GLRA1P23415 457 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 ERVK11-1P61568 191 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 MRPS10P82664 201 aaKnown RBP13.05□□□□□ -0.32
UPF1-206ENST00000598471 MADCAM1Q13477 382 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 MPV17LQ2QL34 196 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 SMIM21Q3B7S5 101 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 C11orf71Q6IPW1 123 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 IZUMO1Q8IYV9 350 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 C1orf87Q8N0U7 546 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 BATF2Q8N1L9 274 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 DTX3Q8N9I9 347 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 OR4M2Q8NGB6 313 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 BORCS5Q969J3 196 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 RAB3CQ96E17 227 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 NICN1Q9BSH3 213 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 CCDC32Q9BV29 185 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 GCM1Q9NP62 436 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 LAMP3Q9UQV4 416 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 NPTNQ9Y639 398 aa13.05□□□□□ -0.32
UPF1-206ENST00000598471 RAB27BO00194 218 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 SOD3P08294 240 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 BLVRBP30043 206 aaPredicted RBP13.04□□□□□ -0.32
UPF1-206ENST00000598471 TAF9Q16594 264 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 ZNF181Q2M3W8 571 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 PIGYQ3MUY2 71 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 SPIN3Q5JUX0 258 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 BIVMQ86UB2 503 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A1Q86YD7 464 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 SNX29P2Q8IUI4 249 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 ZCCHC24Q8N2G6 241 aaKnown RBP13.04□□□□□ -0.32
UPF1-206ENST00000598471 NEDD4LQ96PU5 975 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 CACNG6Q9BXT2 260 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 SRRQ9GZT4 340 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 SPACA1Q9HBV2 294 aa13.04□□□□□ -0.32
UPF1-206ENST00000598471 A0A0A6YYD4 124 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 SRRM5B3KS81 715 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 F8VVB4 439 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 F8VWA3 439 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 J3QRK9 145 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 GEMIN2O14893 280 aaKnown RBP13.03□□□□□ -0.32
UPF1-206ENST00000598471 CTDSPLO15194 276 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 SOCS1O15524 211 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 OR7C1O76099 320 aaPredicted RBP13.03□□□□□ -0.32
UPF1-206ENST00000598471 KNG1P01042 644 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 CD8AP01732 235 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 GSTP1P09211 210 aaKnown RBP13.03□□□□□ -0.32
UPF1-206ENST00000598471 PTH2RP49190 550 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 SNU13P55769 128 aaKnown RBP13.03□□□□□ -0.32
UPF1-206ENST00000598471 GMFBP60983 142 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 IKZF1Q13422 519 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 ZNF79Q15937 498 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 MOGAT2Q3SYC2 334 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 SPRNQ5BIV9 151 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 ACP7Q6ZNF0 438 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 Q6ZTK2 550 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 NEU4Q8WWR8 484 aaPredicted RBP13.03□□□□□ -0.32
UPF1-206ENST00000598471 HES4Q9HCC6 221 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 DNAJB11Q9UBS4 358 aa13.03□□□□□ -0.32
UPF1-206ENST00000598471 IGHV1-69-2A0A0G2JMI3 117 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 H7C417 338 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PDCD6O75340 191 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms