RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 LIN7BQ9HAP6 207 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 DYNLRB1Q9NP97 96 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 UFSP2Q9NUQ7 469 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 FAIMQ9NVQ4 179 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 NKIRAS2Q9NYR9 191 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 ABRACLQ9P1F3 81 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 ING4Q9UNL4 249 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 CMYA5Q8N3K9 4069 aa7.94□□□□□ -1.14
TRIM28-208ENST00000597172 TMEM272A0A1B0GTI8 110 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 A0A1W2PP11 408 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TMEM14DPA8MWL7 114 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 J3QT63 122 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 OVOL3O00110 214 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TCF21O43680 179 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 KDM4BO94953 1096 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 BPNT1O95861 308 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 HPXP02790 462 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 SFTPBP07988 381 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 ACAA1P09110 424 aaPredicted RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 VSIG8P0DPA2 414 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 CALCBP10092 127 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TNFSF4P23510 183 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 SOX6P35712 828 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 NPBWR2P48146 333 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 BMXP51813 675 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 EFNB2P52799 333 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 ERVK11-1P61568 191 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 HOXA4Q00056 320 aaPredicted RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 MZT1Q08AG7 82 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 IL24Q13007 206 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 DYNC1I2Q13409 638 aaKnown RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 PCGF3Q3KNV8 242 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 AWAT2Q6E213 333 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 WDR82Q6UXN9 313 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 MOGAT3Q86VF5 341 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 SAXO1Q8IYX7 474 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 PNLDC1Q8NA58 520 aaKnown RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TMEM104Q8NE00 496 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 Q8NFD4 153 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 OR10K1Q8NGX5 313 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 MCFD2Q8NI22 146 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TBC1D15Q8TC07 691 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 LGALS14Q8TCE9 139 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 SLAMF9Q96A28 289 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 KCTD12Q96CX2 325 aaKnown RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 ZNF488Q96MN9 340 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 VRK1Q99986 396 aaPredicted RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 CACNG6Q9BXT2 260 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 MIXL1Q9H2W2 232 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 GCM1Q9NP62 436 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 TREM2Q9NZC2 230 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 PTTG2Q9NZH5 202 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 COMMD3Q9UBI1 195 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 FBLN5Q9UBX5 448 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 FBXO9Q9UK97 447 aaPredicted RBP7.93□□□□□ -1.14
TRIM28-208ENST00000597172 SPATA2Q9UM82 520 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 A3GALT2U3KPV4 340 aa7.93□□□□□ -1.14
TRIM28-208ENST00000597172 NOS1APO75052 506 aaPredicted RBP7.92□□□□□ -1.14
TRIM28-208ENST00000597172 LHBP01229 141 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 PGA5P0DJD9 388 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 ARSBP15848 533 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 BCL3P20749 454 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 COL8A2P25067 703 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 CFHR2P36980 270 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 CDKN1AP38936 164 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 COMPP49747 757 aaPredicted RBP7.92□□□□□ -1.14
TRIM28-208ENST00000597172 UNC119Q13432 240 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 TMEM249Q2WGJ8 235 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 METAP1DQ6UB28 335 aaPredicted RBP7.92□□□□□ -1.14
TRIM28-208ENST00000597172 IL17RELQ6ZVW7 336 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 MKXQ8IYA7 352 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 BATF2Q8N1L9 274 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 OR6Q1Q8NGQ2 317 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 ZNF671Q8TAW3 534 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 Q8TCH9 128 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 ACOT12Q8WYK0 555 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 ERGIC1Q969X5 290 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 SLC25A38Q96DW6 304 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 CPNE2Q96FN4 548 aaPredicted RBP7.92□□□□□ -1.14
TRIM28-208ENST00000597172 METTL9Q9H1A3 318 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 MMP27Q9H306 513 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 FN3KRPQ9HA64 309 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 DECR2Q9NUI1 292 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 C1orf123Q9NWV4 160 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 DCAF16Q9NXF7 216 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 IL36GQ9NZH8 169 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 GHRLQ9UBU3 117 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 CACNG2Q9Y698 323 aa7.92□□□□□ -1.14
TRIM28-208ENST00000597172 A0A0A6YYD4 124 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 A6NLC8 198 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 LYNX1G3V0Z9 82 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.91□□□□□ -1.14
TRIM28-208ENST00000597172 H7C417 338 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 WNT9BO14905 357 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 AKR7A2O43488 359 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 HPGDSO60760 199 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 NDUFS7O75251 213 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 CLPXO76031 633 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 HTR3BO95264 441 aa7.91□□□□□ -1.14
TRIM28-208ENST00000597172 UBBP0CG47 229 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms