RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ACTL9Q8TC94 416 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PHOSPHO2Q8TCD6 241 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 ORAOV1Q8WV07 137 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 ING5Q8WYH8 240 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 TMIGD2Q96BF3 282 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 OTUB2Q96DC9 234 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 CPB2Q96IY4 423 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 SPACA5Q96QH8 159 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PEBP4Q96S96 227 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 TSNAXQ99598 290 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 TM6SF2Q9BZW4 377 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PORCNQ9H237 461 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 DSN1Q9H410 356 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 FAM60AQ9NP50 221 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PARP11Q9NR21 331 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 FLVCR2Q9UPI3 526 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 RBMX2Q9Y388 322 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 BZW2Q9Y6E2 419 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PRR14LQ5THK1 2151 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 TRAV8-7A0A075B6U6 113 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 FAM240AA0A1B0GVK7 77 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 D6RAR5 112 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 E7EQL1 145 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 M0R1B8 84 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 UPK1AO00322 258 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 SC5DO75845 299 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 HOXB8P17481 243 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 HLA-GP17693 338 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 TUFMP49411 452 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 C2orf54Q08AI8 447 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 PDZD11Q5EBL8 140 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 ZNF470Q6ECI4 717 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 GAPTQ8N292 157 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 LY6G5BQ8NDX9 201 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 IGF2BP2-AS1Q96M15 143 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 UTP23Q9BRU9 249 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 HINT2Q9BX68 163 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 ANKHQ9HCJ1 492 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 IFNKQ9P0W0 207 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 V9GYY9 64 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 SSH2Q76I76 1423 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 SDK2Q58EX2 2172 aa1.89□□□□□ -2.11
SMCHD1-204ENST00000581226 BAZ1BQ9UIG0 1483 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 PRMT5O14744 637 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 AQP9O43315 295 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 NDUFS5O43920 106 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 CD8AP01732 235 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 IVLP07476 585 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 OR5AL1P0C617 328 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 OR4Q2P0C623 313 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 CD9P21926 228 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 LCN1P31025 176 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 PSMB2P49721 201 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 TAS2R60P59551 318 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 TNXAQ16473 311 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 C18orf21Q32NC0 220 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 AADACL4Q5VUY2 407 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 OR4K2Q8NGD2 314 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 ZFAND1Q8TCF1 268 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 CIDECQ96AQ7 238 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 PRRG3Q9BZD7 231 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 RDH14Q9HBH5 336 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 ABCB9Q9NP78 766 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 RMND1Q9NWS8 449 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 ACOT9Q9Y305 439 aa1.88□□□□□ -2.11
SMCHD1-204ENST00000581226 AQRO60306 1485 aaKnown RBP eCLIP1.88□□□□□ -2.114e-6■■■■■ 31
SMCHD1-204ENST00000581226 BRI3O95415 125 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 CPSF4O95639 269 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 CXorf1O96002 111 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 PRPS1L1P21108 318 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 BGNP21810 368 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 GPR4P46093 362 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 NUDT2P50583 147 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 WDR43Q15061 677 aaKnown RBP eCLIP1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 TTC32Q5I0X7 151 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 ACTL10Q5JWF8 245 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 CA13Q8N1Q1 262 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 ZDHHC22Q8N966 263 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 ADTRPQ96IZ2 230 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 RAB1BQ9H0U4 201 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 SYT4Q9H2B2 425 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 CLEC2DQ9UHP7 191 aa1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 KLF13Q9Y2Y9 288 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 YLPM1P49750 1951 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-204ENST00000581226 IGKV1OR2-108A0A075B7D4 117 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 SLC5A10A0PJK1 596 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 SEC14L6B5MCN3 397 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 IGLL5B9A064 214 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 H3BQ85 93 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 NDUFS8O00217 210 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 GATCO43716 136 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 SYNGR2O43760 224 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 SPOPO43791 374 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 DEDDO75618 318 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 ZMPSTE24O75844 475 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 IGHMP01871 453 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CDK1P06493 297 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CCL2P13500 99 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 TEAD1P28347 426 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms