RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C11orf44Q8N8P7 122 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 DTX3Q8N9I9 347 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 OR13D1Q8NGV5 346 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 CEP19Q96LK0 163 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 CIB1Q99828 191 aa13.01□□□□□ -0.33
CLN3-229ENST00000567963 APOL3O95236 402 aa13□□□□□ -0.33
CLN3-229ENST00000567963 RBP4P02753 201 aa13□□□□□ -0.33
CLN3-229ENST00000567963 ARG1P05089 322 aa13□□□□□ -0.33
CLN3-229ENST00000567963 ZNF728P0DKX0 622 aa13□□□□□ -0.33
CLN3-229ENST00000567963 RAB13P51153 203 aa13□□□□□ -0.33
CLN3-229ENST00000567963 EDDM3BP56851 147 aa13□□□□□ -0.33
CLN3-229ENST00000567963 GDPD3Q7L5L3 318 aa13□□□□□ -0.33
CLN3-229ENST00000567963 CCDC54Q8NEL0 328 aa13□□□□□ -0.33
CLN3-229ENST00000567963 OR11H6Q8NGC7 330 aa13□□□□□ -0.33
CLN3-229ENST00000567963 SLAMF9Q96A28 289 aa13□□□□□ -0.33
CLN3-229ENST00000567963 MALSU1Q96EH3 234 aa13□□□□□ -0.33
CLN3-229ENST00000567963 ADI1Q9BV57 179 aa13□□□□□ -0.33
CLN3-229ENST00000567963 CDCA4Q9BXL8 241 aa13□□□□□ -0.33
CLN3-229ENST00000567963 CHST5Q9GZS9 411 aa13□□□□□ -0.33
CLN3-229ENST00000567963 TBL2Q9Y4P3 447 aaKnown RBP13□□□□□ -0.33
CLN3-229ENST00000567963 MEX3AA1L020 520 aaKnown RBP12.99□□□□□ -0.33
CLN3-229ENST00000567963 ODF3BA8MYP8 253 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 GATBO75879 557 aaKnown RBP12.99□□□□□ -0.33
CLN3-229ENST00000567963 INMTO95050 263 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 SERPINA3P01011 423 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OPN1MWP04001 364 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OPN1MW2P0DN77 364 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OPN1MW3P0DN78 364 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 IGHV1-8P0DP01 117 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 LDLRAD2Q5SZI1 272 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 ZNF626Q68DY1 528 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 CCBE1Q6UXH8 406 aaPredicted RBP12.99□□□□□ -0.33
CLN3-229ENST00000567963 EGFL6Q8IUX8 553 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OR8H2Q8N162 312 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 PRSS35Q8N3Z0 413 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OR10H4Q8NGA5 316 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 OR8J1Q8NGP2 316 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 C10orf35Q96D05 121 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 SNX22Q96L94 193 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 NKX3-1Q99801 234 aaPredicted RBP12.99□□□□□ -0.33
CLN3-229ENST00000567963 TCF19Q9Y242 345 aa12.99□□□□□ -0.33
CLN3-229ENST00000567963 VSIG10L2P0DP72 767 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 ATP6V1E1P36543 226 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 MEF2CQ06413 473 aaPredicted RBP12.98□□□□□ -0.33
CLN3-229ENST00000567963 TMED1Q13445 227 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 FAM189A2Q15884 450 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 SSX2Q16385 188 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 PLA1AQ53H76 456 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 SLC25A26Q70HW3 274 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 RDH10Q8IZV5 341 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 EME1Q96AY2 570 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 FOXRED1Q96CU9 486 aaPredicted RBP12.98□□□□□ -0.33
CLN3-229ENST00000567963 BORCS8Q96FH0 119 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 ZNF714Q96N38 554 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 GABARAPL3Q9BY60 117 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 ZNF702PQ9H963 129 aa12.98□□□□□ -0.33
CLN3-229ENST00000567963 SEBOXQ9HB31 216 aaPredicted RBP12.98□□□□□ -0.33
CLN3-229ENST00000567963 TMEM82A0PJX8 343 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 FCGR1AP12314 374 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 RASSF2P50749 326 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 ISL1P61371 349 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 C1orf146Q5VVC0 180 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 TCF23Q7RTU1 214 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 Q8N2B8 174 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 RPS4Y2Q8TD47 263 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 PP6455Q8WZ26 134 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 RNF166Q96A37 237 aaPredicted RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 ABCB10Q9NRK6 738 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 SERTAD4Q9NUC0 356 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 OAZ3Q9UMX2 235 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 LOC107986453A0A1B0GWG9 222 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 hADV38S2A0JD32 116 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 A6NDX4 124 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 G3V4G9 280 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 EBAG9O00559 213 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 PLXNB1O43157 2135 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 RRP9O43818 475 aaKnown RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 HAND1O96004 215 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 UBCP0CG48 685 aaKnown RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 RBP2P50120 134 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 ZNF85Q03923 595 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 HABP2Q14520 560 aaPredicted RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 CNN3Q15417 329 aaKnown RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 Q8IYB0 196 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 ENTHD1Q8IYW4 607 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 DNAAF1Q8NEP3 725 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 OR52N4Q8NGI2 321 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 EMG1Q92979 244 aaKnown RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 RFKQ969G6 155 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 CENPNQ96H22 339 aaPredicted RBP12.97□□□□□ -0.33
CLN3-229ENST00000567963 OSBPL10Q9BXB5 764 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 RIBC2Q9H4K1 309 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 IL36RNQ9UBH0 155 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 GNG8Q9UK08 70 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 PITPNC1Q9UKF7 332 aa12.97□□□□□ -0.33
CLN3-229ENST00000567963 IGKV1-9A0A0C4DH69 117 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 PSPNO60542 156 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 IGHA1P01876 353 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 PEX2P28328 305 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 KIR3DL2P43630 455 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms