RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C1orf123Q9NWV4 160 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 POMT1Q9Y6A1 747 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CNTRLQ7Z7A1 2325 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 MEX3AA1L020 520 aaKnown RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CA11O75493 328 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 IFNA10P01566 189 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 SFTPBP07988 381 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 FCGR3AP08637 254 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 QDPRP09417 244 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 SFTA3P0C7M3 94 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF43P17038 809 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 RBMXP38159 391 aaKnown RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 LPAR6P43657 344 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 PEA15Q15121 130 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 HIST3H3Q16695 136 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 OR5L2Q8NGL0 311 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 RXFP4Q8TDU9 374 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 EDARADDQ8WWZ3 215 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF775Q96BV0 537 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CPNE2Q96FN4 548 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 PECRQ9BY49 303 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF160Q9HCG1 818 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 PARP11Q9NR21 331 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF726A6NNF4 738 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 EIF3GO75821 320 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS4A-204ENST00000566354 JTBO76095 146 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 KNG1P01042 644 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 GAPDHP04406 335 aaKnown RBP11.56□□□□□ -0.56
VPS4A-204ENST00000566354 SPP1P10451 314 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 ANOS1P23352 680 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 NFYBP25208 207 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF84P51523 738 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 F2RL1P55085 397 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 TGIF1Q15583 401 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 BTNL8Q6UX41 500 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 KDF1Q8NAX2 398 aaPredicted RBP11.56□□□□□ -0.56
VPS4A-204ENST00000566354 CYYR1Q96J86 154 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 OR5B2Q96R09 309 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 C2orf88Q9BSF0 95 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 ZFHX4Q86UP3 3567 aa11.56□□□□□ -0.56
VPS4A-204ENST00000566354 NSG1A0A0A6YYJ2 146 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 K7EPK0 472 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 ZFAND5O76080 213 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 OPN1LWP04000 364 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SERPINA5P05154 406 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 HPNP05981 417 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF708P17019 499 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 RPL12P30050 165 aaKnown RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 RBM39Q14498 530 aaKnown RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 IAH1Q2TAA2 248 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SLC16A14Q7RTX9 510 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 TMPRSS7Q7RTY8 843 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 C1QL2Q7Z5L3 287 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 FAM71E2Q8N5Q1 922 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 PGAM5Q96HS1 289 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 S100A13Q99584 98 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 TM2D1Q9BX74 207 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 METTL7AQ9H8H3 244 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 ASCL3Q9NQ33 180 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 IL17BQ9UHF5 180 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 CFAP47Q6ZTR5 3102 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 DOCK10Q96BY6 2186 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 LOC102725191A0A1B0GVB3 256 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 A0A1W2PNR3 127 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 TMEM210A6NLX4 147 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 CDRT15L2A8MXV6 281 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 TLX3O43711 291 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 FBXO24O75426 580 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 IGLV3-1P01715 115 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 NME2P22392 152 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 CPT2P23786 658 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 THBS4P35443 961 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 DVL1P1P54792 670 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SMCO1Q147U7 214 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF239Q16600 458 aaKnown RBP11.55□□□□□ -0.56
VPS4A-204ENST00000566354 TMEM268Q5VZI3 342 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 CRIP3Q6Q6R5 217 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SGPP2Q8IWX5 399 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 OR5D18Q8NGL1 313 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SSX3Q99909 188 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SULT4A1Q9BR01 284 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 DEFB126Q9BYW3 111 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 MYOTQ9UBF9 498 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 SPTBN4Q9H254 2564 aa11.55□□□□□ -0.56
VPS4A-204ENST00000566354 LOC400499M0QZD8 3231 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF814B7Z6K7 855 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 C21orf140B9A014 251 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 RRP8O43159 456 aaKnown RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 OR2J2O76002 312 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 IGHEP01854 428 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 NR2C1P13056 603 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 RCC1P18754 421 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 PAX6P26367 422 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 PTGER4P35408 488 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 PTGDSP41222 190 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 LSM6P62312 80 aaKnown RBP11.54□□□□□ -0.56
VPS4A-204ENST00000566354 DNLZQ5SXM8 178 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 FOXRED2Q8IWF2 684 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 IL22RA1Q8N6P7 574 aa11.54□□□□□ -0.56
VPS4A-204ENST00000566354 WDSUB1Q8N9V3 476 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms