RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PP6455Q8WZ26 134 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 CEP19Q96LK0 163 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 S100A14Q9HCY8 104 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 MRPS18AQ9NVS2 196 aaKnown RBP12.1□□□□□ -0.47
CLN3-213ENST00000565047 VPREB3Q9UKI3 123 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 SLC7A11Q9UPY5 501 aa12.1□□□□□ -0.47
CLN3-213ENST00000565047 SF3B6Q9Y3B4 125 aaKnown RBP12.1□□□□□ -0.47
CLN3-213ENST00000565047 DAPL1A0PJW8 107 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 FAM90A8PA6NJQ4 464 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 H0YAE9 185 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 GATBO75879 557 aaKnown RBP12.09□□□□□ -0.47
CLN3-213ENST00000565047 IGHA1P01876 353 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 NPBWR2P48146 333 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 ZNF91Q05481 1191 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 BLMHQ13867 455 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 TMEM244Q5VVB8 128 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 SLC25A26Q70HW3 274 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 EGFL6Q8IUX8 553 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 ACBD7Q8N6N7 88 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 OR52N4Q8NGI2 321 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 SLAMF9Q96A28 289 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 PLEKHA1Q9HB21 404 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 IL36RNQ9UBH0 155 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 OR14J1Q9UGF5 321 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 MYRFQ9Y2G1 1151 aa12.09□□□□□ -0.47
CLN3-213ENST00000565047 VWFP04275 2813 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 MT-ND2P03891 347 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 CHRM2P08172 466 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 DBTP11182 482 aaKnown RBP12.08□□□□□ -0.48
CLN3-213ENST00000565047 ATF1P18846 271 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 CAPZA1P52907 286 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 GALEQ14376 348 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 ZNF146Q15072 292 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 AANATQ16613 207 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 LDLRAD2Q5SZI1 272 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 FAM220AQ7Z4H9 259 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 PPP1R35Q8TAP8 253 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 APH1BQ8WW43 257 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 FGGYQ96C11 551 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 BORCS8Q96FH0 119 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 C4orf36Q96KX1 117 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 ADI1Q9BV57 179 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 ISG20L2Q9H9L3 353 aaKnown RBP12.08□□□□□ -0.48
CLN3-213ENST00000565047 RNF114Q9Y508 228 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 ORC6Q9Y5N6 252 aa12.08□□□□□ -0.48
CLN3-213ENST00000565047 IGKV1-12A0A0C4DH73 117 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 E9PI62 339 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 ANGPTL7O43827 346 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 PSPNO60542 156 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 SERPINA3P01011 423 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 IGKV1D-12P01611 117 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 PAX6P26367 422 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 RBP2P50120 134 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 CNN3Q15417 329 aaKnown RBP12.07□□□□□ -0.48
CLN3-213ENST00000565047 TREML4Q6UXN2 200 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 LHFPL3Q86UP9 236 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 OR8H2Q8N162 312 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 PQLC1Q8N2U9 271 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 OR5R1Q8NH85 324 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 SNX22Q96L94 193 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 C9orf16Q9BUW7 83 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 HEXA-AS1Q9H8Q6 139 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 RBFOX1Q9NWB1 397 aaKnown RBP12.07□□□□□ -0.48
CLN3-213ENST00000565047 FAM118AQ9NWS6 357 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 GMPPBQ9Y5P6 360 aa12.07□□□□□ -0.48
CLN3-213ENST00000565047 TRBV2A0A0J9YWF9 115 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 LOC100130705A0A1B0GUX0 176 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 ODF3BA8MYP8 253 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 J3QLW9 94 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 WIPF1O43516 503 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 RBP4P02753 201 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 HTR1AP08908 422 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 ZNF19P17023 458 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 BCL3P20749 454 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 AZGP1P25311 298 aaKnown RBP12.06□□□□□ -0.48
CLN3-213ENST00000565047 TGFBR2P37173 567 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 BMXP51813 675 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 ATP1B3P54709 279 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 PDZK1IP1Q13113 114 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 ALKBH1Q13686 389 aaKnown RBP12.06□□□□□ -0.48
CLN3-213ENST00000565047 ASPHD2Q6ICH7 369 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 C10orf67Q8IYJ2 551 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 DYNAPQ8N1N2 210 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 SYS1Q8N2H4 156 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 SSX3Q99909 188 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 ALG8Q9BVK2 526 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 AMBNQ9NP70 447 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 HHLA2Q9UM44 414 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 DSCAML1Q8TD84 2053 aa12.06□□□□□ -0.48
CLN3-213ENST00000565047 A0A1W2PPH5 198 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 VGLL3A8MV65 326 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 H3BUX3 64 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 MPZL2O60487 215 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 WBP4O75554 376 aaKnown RBP12.05□□□□□ -0.48
CLN3-213ENST00000565047 INMTO95050 263 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ALX3O95076 343 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ZFPL1O95159 310 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 HAND1O96004 215 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 PAHP00439 452 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ZNF728P0DKX0 622 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms