RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TMEM104Q8NE00 496 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 OR51T1Q8NGJ9 327 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 NEU4Q8WWR8 484 aaPredicted RBP10.84□□□□□ -0.67
CLK3-214ENST00000564096 CCL19Q99731 98 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 TM2D1Q9BX74 207 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 MIXL1Q9H2W2 232 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 BANF2Q9H503 90 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 CXorf56Q9H5V9 222 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 SPACA1Q9HBV2 294 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 GCM1Q9NP62 436 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 RBFOX1Q9NWB1 397 aaKnown RBP10.84□□□□□ -0.67
CLK3-214ENST00000564096 RASL12Q9NYN1 266 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 MTCH1Q9NZJ7 389 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 RNF7Q9UBF6 113 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 CADP27708 2225 aa10.84□□□□□ -0.67
CLK3-214ENST00000564096 HEATR1Q9H583 2144 aaKnown RBP10.84□□□□□ -0.67
CLK3-214ENST00000564096 USP9XQ93008 2570 aaPredicted RBP10.83□□□□□ -0.68
CLK3-214ENST00000564096 FABP12A6NFH5 140 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 SRRM5B3KS81 715 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 PITPNBP48739 271 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 EFNB2P52799 333 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 MPV17LQ2QL34 196 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 Q8NFD4 153 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 OR4M1Q8NGD0 313 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 Q96M66 194 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 GAL3ST1Q99999 423 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 LPAR5Q9H1C0 372 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 AKIP1Q9NQ31 210 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 DNAJB11Q9UBS4 358 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 ST3GAL6Q9Y274 331 aa10.83□□□□□ -0.68
CLK3-214ENST00000564096 IGHV1-69-2A0A0G2JMI3 117 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 A0A1W2PP11 408 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 CYSRT1A8MQ03 144 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 XRCC3O43542 346 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 GABRR1P24046 479 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 CDK2P24941 298 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 MNDAP41218 407 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 NPBWR2P48146 333 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 ERVK11-1P61568 191 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 MRPS10P82664 201 aaKnown RBP10.82□□□□□ -0.68
CLK3-214ENST00000564096 MRPS11P82912 194 aaKnown RBP10.82□□□□□ -0.68
CLK3-214ENST00000564096 IKZF1Q13422 519 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 HFEQ30201 348 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 PYHIN1Q6K0P9 492 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 ZNF826PQ6ZT77 177 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 C11orf53Q8IXP5 236 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 BATF2Q8N1L9 274 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 OR10R2Q8NGX6 335 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 ZNF488Q96MN9 340 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 NEDD4LQ96PU5 975 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 PLEKHF2Q9H8W4 249 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 HES4Q9HCC6 221 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 DLL4Q9NR61 685 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 METRNQ9UJH8 293 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 EDARQ9UNE0 448 aa10.82□□□□□ -0.68
CLK3-214ENST00000564096 OR7C1O76099 320 aaPredicted RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 KNG1P01042 644 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 CD8AP01732 235 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 VEGFCP49767 419 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 SNU13P55769 128 aaKnown RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 TAS2R20P59543 309 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 GMFBP60983 142 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 MRPS15P82914 257 aaKnown RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 PLA2G7Q13093 441 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 KCNJ8Q15842 424 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 PIGYQ3MUY2 71 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 NKAPLQ5M9Q1 402 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 ACP7Q6ZNF0 438 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 PEG10Q86TG7 708 aaKnown RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 ZCCHC24Q8N2G6 241 aaKnown RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 MFSD4AQ8N468 514 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 CHST4Q8NCG5 386 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 RDH5Q92781 318 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 RAB3CQ96E17 227 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 PSMG3-AS1Q96PY0 264 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 NICN1Q9BSH3 213 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 MYOZ1Q9NP98 299 aaPredicted RBP10.81□□□□□ -0.68
CLK3-214ENST00000564096 TMEM106BQ9NUM4 274 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 NLKQ9UBE8 527 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 PLEKHA6Q9Y2H5 1048 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 V9GYH0 126 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 PLCE1Q9P212 2302 aa10.81□□□□□ -0.68
CLK3-214ENST00000564096 NKX6-3A6NJ46 265 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 SERPINE3A8MV23 424 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 GEMIN2O14893 280 aaKnown RBP10.8□□□□□ -0.68
CLK3-214ENST00000564096 PDCD6O75340 191 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 HPXP02790 462 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 ZNF44P15621 663 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 HIST1H1DP16402 221 aaKnown RBP10.8□□□□□ -0.68
CLK3-214ENST00000564096 CD40LGP29965 261 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 BLVRBP30043 206 aaPredicted RBP10.8□□□□□ -0.68
CLK3-214ENST00000564096 TAF9Q16594 264 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 MICBQ29980 383 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 PYDC2Q56P42 97 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 FAM89BQ8N5H3 189 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 GCSAMQ8N6F7 178 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 BOLLQ8N9W6 283 aaKnown RBP10.8□□□□□ -0.68
CLK3-214ENST00000564096 CCL17Q92583 94 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 MARVELD3Q96A59 401 aa10.8□□□□□ -0.68
CLK3-214ENST00000564096 CCDC32Q9BV29 185 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms