RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 PAX6P26367 422 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ARR3P36575 388 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 GPR4P46093 362 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 TGM4P49221 684 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 PSMB2P49721 201 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 RPL31P62899 125 aaKnown RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 GRB2P62993 217 aaKnown RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ADIGQ0VDE8 80 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 LAMTOR4Q0VGL1 99 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 GPR176Q14439 515 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ANGPT1Q15389 498 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 TOMM34Q15785 309 aaPredicted RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 VAMP3Q15836 100 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 USF2Q15853 346 aaPredicted RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 FAM27D1Q5T7N8 215 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 FAM104BQ5XKR9 115 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 PID1Q7Z2X4 250 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 RBM45Q8IUH3 476 aaKnown RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 DRAXINQ8NBI3 349 aaPredicted RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 OR2M7Q8NG81 312 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ZNF649Q9BS31 505 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 HINT2Q9BX68 163 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 MAP1LC3CQ9BXW4 147 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 PRRG3Q9BZD7 231 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ANKHQ9HCJ1 492 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 TREM1Q9NP99 234 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ZNF302Q9NR11 478 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 PARP11Q9NR21 331 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ASF1BQ9NVP2 202 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 ZNHIT6Q9NWK9 470 aaKnown RBP1.35□□□□□ -2.19
VPS13C-207ENST00000558919 RWDD2AQ9UIY3 292 aa1.35□□□□□ -2.19
VPS13C-207ENST00000558919 LOC102724200A0A096LPH7 203 aaPredicted RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 IGKV1-6A0A0C4DH72 117 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 A0A0G2JMP0 313 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 A0A0X1KG70 313 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 M0R1B8 84 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ZNF593O00488 134 aaPredicted RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 NDUFS5O43920 106 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 VAPBO95292 243 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 IGKV1-39P01597 117 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 IGHV1-46P01743 117 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 IGKV1D-39P04432 117 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 OR4Q2P0C623 313 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CCL2P13500 99 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CD99P14209 185 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 HLA-GP17693 338 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CD9P21926 228 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 HTR2CP28335 458 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 LCN1P31025 176 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 FUSP35637 526 aaKnown RBP eCLIP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 SPAM1P38567 509 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 P2RY2P41231 377 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ATP5J2P56134 94 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 TAL2Q16559 108 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 LINC00303Q3SY05 128 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 PYDC2Q56P42 97 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 TTC32Q5I0X7 151 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ZNF678Q5SXM1 525 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 AMMECR1LQ6DCA0 310 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 EPGNQ6UW88 154 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 SETD3Q86TU7 594 aaPredicted RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 BBS7Q8IWZ6 715 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CA13Q8N1Q1 262 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 LY6G5BQ8NDX9 201 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 OR4D6Q8NGJ1 314 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 OR6N2Q8NGY6 317 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 NT5CQ8TCD5 201 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ORAOV1Q8WV07 137 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CDKL2Q92772 493 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CCDC124Q96CT7 223 aaKnown RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 C20orf144Q9BQM9 153 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 TMED9Q9BVK6 235 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 MS4A8Q9BY19 250 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 API5Q9BZZ5 524 aaKnown RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 COA1Q9GZY4 146 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CHRNA10Q9GZZ6 450 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 RAB1BQ9H0U4 201 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 DUSP21Q9H596 190 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 WDR55Q9H6Y2 383 aaPredicted RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 CA10Q9NS85 328 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 RAB22AQ9UL26 194 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 RAB23Q9ULC3 237 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 MCTS1Q9ULC4 181 aaKnown RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 AP3M1Q9Y2T2 418 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ACOT9Q9Y305 439 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 RBMX2Q9Y388 322 aaKnown RBP1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ORC6Q9Y5N6 252 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 GMEB1Q9Y692 573 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ENPP4Q9Y6X5 453 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 V9GYY9 64 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 ADAMTSL3P82987 1691 aa1.34□□□□□ -2.19
VPS13C-207ENST00000558919 VWA8A3KMH1 1905 aa1.34□□□□□ -2.2
VPS13C-207ENST00000558919 COL5A3P25940 1745 aaPredicted RBP1.34□□□□□ -2.2
VPS13C-207ENST00000558919 NUP205Q92621 2012 aa1.33□□□□□ -2.2
VPS13C-207ENST00000558919 COL11A1P12107 1806 aaPredicted RBP1.33□□□□□ -2.2
VPS13C-207ENST00000558919 LTBP2Q14767 1821 aa1.33□□□□□ -2.2
VPS13C-207ENST00000558919 TRAV8-7A0A075B6U6 113 aa1.33□□□□□ -2.2
VPS13C-207ENST00000558919 FAM240AA0A1B0GVK7 77 aa1.33□□□□□ -2.2
VPS13C-207ENST00000558919 E7EQL1 145 aa1.33□□□□□ -2.2
VPS13C-207ENST00000558919 UPK1AO00322 258 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms