RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TGIF1Q15583 401 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 HLA-BQ31612 363 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 PLXDC2Q6UX71 529 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 RAB11FIP2Q7L804 512 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 TMEM156Q8N614 296 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 OR10AD1Q8NGE0 317 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 OR52M1Q8NGK5 317 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 OR5L1Q8NGL2 311 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SAT2Q96F10 170 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 IMMP1LQ96LU5 166 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ANGPTL4Q9BY76 406 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 WFDC1Q9HC57 220 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ZFP57Q9NU63 452 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 TUBD1Q9UJT1 453 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ZDHHC8Q9ULC8 765 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 MEMO1Q9Y316 297 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 KLF2Q9Y5W3 355 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 A0A1B0GV50 99 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SYNGR3O43761 229 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 NME2P1O60361 137 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ONECUT2O95948 504 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 CST4P01036 141 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 CD5P06127 495 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 RFC3P40938 356 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 PPT1P50897 306 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF133P52736 654 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 DSCR4P56555 118 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-213ENST00000552720 FAM27BQ5VT28 67 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SLC22A25Q6T423 547 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 Q6ZSR3 168 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 FBXL14Q8N1E6 418 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SPTSSAQ969W0 71 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 GPHA2Q96T91 129 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 METTL9Q9H1A3 318 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 SH3BGRL3Q9H299 93 aa6.51□□□□□ -1.37
LIMA1-213ENST00000552720 AHCTF1Q8WYP5 2266 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 PCSK5Q92824 1860 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 LOC102723996A0A087X1L8 192 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF98A6NK75 572 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF587BE7ETH6 402 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 RRP8O43159 456 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 IGHV3-9P01782 118 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 RFPL3SP0C7P2 107 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF728P0DKX0 622 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SPINK2P20155 84 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 CHATP28329 748 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SSR4P51571 173 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SUCLG1P53597 346 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 RPS18P62269 152 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 TMEM187Q14656 261 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SHEQ5VZ18 495 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 LYSMD4Q5XG99 296 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NSUN5P2Q63ZY6 315 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SLC23A3Q6PIS1 610 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 OPN5Q6U736 354 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 IFI44Q8TCB0 444 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 RTN4IP1Q8WWV3 396 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 KIRREL1Q96J84 757 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 DUSP23Q9BVJ7 150 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SLC2A9Q9NRM0 540 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 DECR2Q9NUI1 292 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 WNT16Q9UBV4 365 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 CFAP47Q6ZTR5 3102 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 A0A087WZY1 265 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 COLCA2A8K830 154 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NUDT19A8MXV4 375 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 PATE3B3GLJ2 98 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 TAAR5O14804 337 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 EIF1BO60739 113 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 IFNA21P01568 189 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 DAOP14920 347 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 MRPS34P82930 218 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 PSG4Q00888 419 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NHLH2Q02577 135 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF92Q03936 586 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF616Q08AN1 781 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 SMCO1Q147U7 214 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 DAZAP2Q15038 168 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ABCA11PQ4W5N1 156 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 MIDNQ504T8 468 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 RPS19BP1Q86WX3 136 aaKnown RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 CALHM1Q8IU99 346 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 OR1F12Q8NHA8 337 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 GLYATL2Q8WU03 294 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 BORCS8Q96FH0 119 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 CLCC1Q96S66 551 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NAA11Q9BSU3 229 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-213ENST00000552720 C20orf24Q9BUV8 137 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NAA60Q9H7X0 242 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 PARP11Q9NR21 331 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 NECAP2Q9NVZ3 263 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 P4HTMQ9NXG6 502 aa6.5□□□□□ -1.37
LIMA1-213ENST00000552720 ZDBF2Q9HCK1 2354 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 CXCL13O43927 109 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 CA11O75493 328 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 JTBO76095 146 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 VAMP5O95183 116 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 NRASP01111 189 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 FGF5P12034 268 aa6.49□□□□□ -1.37
LIMA1-213ENST00000552720 NR2C1P13056 603 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms