RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SORL1Q92673 2214 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 GGT3PA6NGU5 568 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 A6NIZ1 184 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 RHBDL1O75783 438 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 FRMD6-AS1P0C7T7 363 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 CCL3L1P16619 93 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 TNFRSF1BP20333 461 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 GGT2P36268 569 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 MYCNOSP40205 109 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 SLC1A6P48664 564 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 POLR2JP52435 117 aaKnown RBP5.11□□□□□ -1.59
LIMA1-204ENST00000549064 RAP1BP61224 184 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 LSM6P62312 80 aaKnown RBP5.11□□□□□ -1.59
LIMA1-204ENST00000549064 RAP1AP62834 184 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 HIST1H3AP68431 136 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF92Q03936 586 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 FHL1Q13642 323 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 SNAI3Q3KNW1 292 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 KRTAP27-1Q3LI81 207 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 ABCA11PQ4W5N1 156 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 HIST2H3PS2Q5TEC6 136 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 MSANTD1Q6ZTZ1 278 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 HIST2H3AQ71DI3 136 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 DPY19L4Q7Z388 723 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 OR2W3Q7Z3T1 314 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF329Q86UD4 541 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 C11orf42Q8N5U0 333 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 KLHL30-AS1Q8NEE0 82 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 OR56B2PQ8NGI1 322 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 OR51A7Q8NH64 312 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 TMEM239Q8WW34 195 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 DDB2Q92466 427 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 Q96M85 177 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 SLC22A4Q9H015 551 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 HDHD2Q9H0R4 259 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 SYT4Q9H2B2 425 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 TMEM38AQ9H6F2 299 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 MAGIXQ9H6Y5 334 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 HEXA-AS1Q9H8Q6 139 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 RNPEPL1Q9HAU8 725 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 VAPAQ9P0L0 249 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 PITPNC1Q9UKF7 332 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF256Q9Y2P7 627 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-204ENST00000549064 NOP16Q9Y3C1 178 aaKnown RBP5.11□□□□□ -1.59
LIMA1-204ENST00000549064 DNAH10Q8IVF4 4471 aa5.11□□□□□ -1.59
LIMA1-204ENST00000549064 PRSS37A4D1T9 235 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 LINC01548A6NM66 108 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ANXA2P2A6NMY6 339 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 BHLHE40O14503 412 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 CDIPTO14735 213 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 POLR3GO15318 223 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 SIGLEC5O15389 551 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 TYROBPO43914 113 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 SLC16A7O60669 478 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 KHDRBS3O75525 346 aaKnown RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 GLCEO94923 617 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ARG1P05089 322 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 IFI30P13284 250 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 CD24P25063 80 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 RBM34P42696 430 aaKnown RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ALDH3A2P51648 485 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 P2RX3P56373 397 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 CAV3P56539 151 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 TAS2R41P59536 307 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 SMN1Q16637 294 aaKnown RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 KIAA1109Q2LD37 5005 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 DEFB136Q30KP8 78 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 CEP78Q5JTW2 689 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 GLYATL3Q5SZD4 288 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 C9orf66Q5T8R8 295 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ZBTB49Q6ZSB9 765 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 SLC16A12Q6ZSM3 486 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 SHFQ7M4L6 423 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 PATL1Q86TB9 770 aaKnown RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ZNRF1Q8ND25 227 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 TMEM185AQ8NFB2 350 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 OR1M1Q8NGA1 313 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 OR8H1Q8NGG4 311 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 OR13C2Q8NGS9 318 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 OR8S1Q8NH09 359 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ANGPTL6Q8NI99 470 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 TAMM41Q96BW9 452 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 C12orf43Q96C57 262 aaKnown RBP5.1□□□□□ -1.59
LIMA1-204ENST00000549064 ORAI1Q96D31 301 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 NRIP3Q9NQ35 241 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 OR6C3Q9NZP0 311 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 MED31Q9Y3C7 131 aa5.1□□□□□ -1.59
LIMA1-204ENST00000549064 HTR3EA5X5Y0 456 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 ODF3BA8MYP8 253 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SEC14L6B5MCN3 397 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 AKR7A2O43488 359 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 ACAA1P09110 424 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-204ENST00000549064 IDO1P14902 403 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 GPX2P18283 190 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 GABRA2P47869 451 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SLC9A3P48764 834 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SLC25A1P53007 311 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SLC34A1Q06495 639 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 TRAP1Q12931 704 aaKnown RBP5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SELPLGQ14242 412 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms