RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 GPR137CQ8N3F9 429 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 CLDN23Q96B33 292 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 C1orf123Q9NWV4 160 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 FRG2CA6NGY1 282 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 PHOX2AO14813 284 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 IGFBP3P17936 291 aaPredicted RBP12.84□□□□□ -0.35
HOXC11-202ENST00000546378 HERV-K104P61576 105 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 DEFA6Q01524 100 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 SPEM2Q0P670 501 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 PHF19Q5T6S3 580 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 FBXL14Q8N1E6 418 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 TMEM156Q8N614 296 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 PLPPR2Q96GM1 343 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 ZNF385AQ96PM9 386 aaKnown RBP12.84□□□□□ -0.35
HOXC11-202ENST00000546378 WFDC1Q9HC57 220 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 C19orf12Q9NSK7 152 aa12.84□□□□□ -0.35
HOXC11-202ENST00000546378 BORCS7-ASMTA0A0B4J1R7 106 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 ALG1L2C9J202 215 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 TIAF1O95411 115 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 B4GALT1P15291 398 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 AADACL3Q5VUY0 350 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 WDR25Q64LD2 544 aaPredicted RBP12.83□□□□□ -0.36
HOXC11-202ENST00000546378 OR5AS1Q8N127 324 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 ADAMTS17Q8TE56 1095 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 HAS2Q92819 552 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 DDIT4LQ96D03 193 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 PCNX1Q96RV3 2341 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 EFNA2O43921 213 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 BPNT1O95861 308 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 MECP2P51608 486 aaKnown RBP12.83□□□□□ -0.36
HOXC11-202ENST00000546378 DVL1P1P54792 670 aaPredicted RBP12.83□□□□□ -0.36
HOXC11-202ENST00000546378 RAP1AP62834 184 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 C5orf46Q6UWT4 87 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 ZNF845Q96IR2 970 aaPredicted RBP12.83□□□□□ -0.36
HOXC11-202ENST00000546378 OR6C1Q96RD1 312 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 MFRPQ9BY79 579 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 LUZP4Q9P127 313 aa12.83□□□□□ -0.36
HOXC11-202ENST00000546378 TERTO14746 1132 aaKnown RBP12.82□□□□□ -0.36
HOXC11-202ENST00000546378 RNF133Q8WVZ7 376 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 MR1Q95460 341 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 SNX22Q96L94 193 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 PECRQ9BY49 303 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 AK3Q9UIJ7 227 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 A0A096LPE4 126 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 A0A1W2PPZ6 126 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 DXOO77932 396 aaKnown RBP12.82□□□□□ -0.36
HOXC11-202ENST00000546378 TRGC2P03986 189 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 IAPPP10997 89 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 CD79AP11912 226 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 ROM1Q03395 351 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 GNMTQ14749 295 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 MPV17LQ2QL34 196 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 SNAI3Q3KNW1 292 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 FNDC7Q5VTL7 733 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 MARS2Q96GW9 593 aaKnown RBP12.82□□□□□ -0.36
HOXC11-202ENST00000546378 EDEM2Q9BV94 578 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 CALHM2Q9HA72 323 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 CACFD1Q9UGQ2 172 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 NPIPA2E9PIF3 369 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 NPIPA3F8WFD2 350 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 RBMXL2O75526 392 aaKnown RBP12.82□□□□□ -0.36
HOXC11-202ENST00000546378 MT-ATP6P00846 226 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 G0S2P27469 103 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 TMEM267Q0VDI3 215 aaPredicted RBP12.82□□□□□ -0.36
HOXC11-202ENST00000546378 SPNS3Q6ZMD2 512 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 OR1K1Q8NGR3 316 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 LIME1Q9H400 295 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 SPTA1P02549 2419 aa12.82□□□□□ -0.36
HOXC11-202ENST00000546378 CD1AP06126 327 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 MMP7P09237 267 aaPredicted RBP12.81□□□□□ -0.36
HOXC11-202ENST00000546378 CXorf66Q5JRM2 361 aaPredicted RBP12.81□□□□□ -0.36
HOXC11-202ENST00000546378 ZNF561Q8N587 486 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 CYB561D1Q8N8Q1 229 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 NMES1Q9C002 83 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 TOLLIPQ9H0E2 274 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 CST4P01036 141 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 OR8U8P0C7N1 319 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 DEFA4P12838 97 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 HNF1AP20823 631 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 HIST2H3PS2Q5TEC6 136 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 UNQ6494/PRO21346Q6UXR6 183 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 OR1N1Q8NGS0 311 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 EDAQ92838 391 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 DEFB126Q9BYW3 111 aa12.81□□□□□ -0.36
HOXC11-202ENST00000546378 FASLGP48023 281 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 EIF5AP63241 154 aaKnown RBP12.8□□□□□ -0.36
HOXC11-202ENST00000546378 ZNF154Q13106 437 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 YRDCQ86U90 279 aaKnown RBP12.8□□□□□ -0.36
HOXC11-202ENST00000546378 RBMXL1Q96E39 390 aaKnown RBP12.8□□□□□ -0.36
HOXC11-202ENST00000546378 ZNF251Q9BRH9 671 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 RAB18Q9NP72 206 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 UFSP2Q9NUQ7 469 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 PKDREJQ9NTG1 2253 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 PMS2P1A4D2B8 440 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 NKX2-6A6NCS4 301 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 HS3ST1O14792 307 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 FGF16O43320 207 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 FPR2P25090 351 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 CSNK1A1P48729 337 aa12.8□□□□□ -0.36
HOXC11-202ENST00000546378 SPINK9Q5DT21 86 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms