RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	MPIG6B	O95866	241 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	IL1A	P01583	271 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	IGHV2-70	P01814	119 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	HEXA	P06865	529 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	SFTPB	P07988	381 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	UBB	P0CG47	229 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC2A2	P11168	524 aa	Predicted RBP	8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	GTF2F2	P13984	249 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	USF1	P22415	310 aa	Predicted RBP	8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	PRDX2	P32119	198 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	BMX	P51813	675 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CAPZA1	P52907	286 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	ERVK11-1	P61568	191 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	DGUOK	Q16854	277 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	TEX36	Q5VZQ5	186 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	ASCL4	Q6XD76	172 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	FAM90A1	Q86YD7	464 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CROCCP3	Q8IVE0	287 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	OSR2	Q8N2R0	312 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	NDNF	Q8TB73	568 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	TBC1D15	Q8TC07	691 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	FAM46B	Q96A09	425 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	FAM3D	Q96BQ1	224 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CCL13	Q99616	98 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	TMEM246	Q9BRR3	403 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	REG4	Q9BYZ8	158 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CST11	Q9H112	138 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	DCSTAMP	Q9H295	470 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	BANF2	Q9H503	90 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	RHOF	Q9HBH0	211 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	HMG20A	Q9NP66	347 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	STEAP1	Q9UHE8	339 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	CEPT1	Q9Y6K0	416 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545	APC	P25054	2843 aa		8.51	□□□□□ -1.05
CPSF7-221	ENST00000543545		A0A0B4J203	849 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	IGHV4-61	A0A0C4DH41	118 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	DPPA5	A6NC42	116 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	CEACAM18	A8MTB9	384 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	VWC2L	B2RUY7	222 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	AIP	O00170	330 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	SH2D1B	O14796	132 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	DEGS1	O15121	323 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	TMPRSS2	O15393	492 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	BPNT1	O95861	308 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	KNG1	P01042	644 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	TFF1	P04155	84 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	PSG2	P11465	335 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	RPS2	P15880	293 aa	Known RBP	8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	FGF12	P61328	243 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	PDCD1	Q15116	288 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	C2orf76	Q3KRA6	126 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	ZNF404	Q494X3	552 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	TMEM155	Q4W5P6	130 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	OR10K2	Q6IF99	312 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	SFXN4	Q6P4A7	337 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	DCDC5	Q6ZRR9	648 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	DNM1P46	Q6ZS02	220 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	NLRC3	Q7RTR2	1065 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	SLC36A1	Q7Z2H8	476 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	NR2C2AP	Q86WQ0	139 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	LYPD6	Q86Y78	171 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	KRTAP1-3	Q8IUG1	177 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	OR51D1	Q8NGF3	324 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	CLDND2	Q8NHS1	167 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	KCNG3	Q8TAE7	436 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	C12orf43	Q96C57	262 aa	Known RBP	8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	ISOC1	Q96CN7	298 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	BCL7B	Q9BQE9	202 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	SELENOI	Q9C0D9	397 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	HES4	Q9HCC6	221 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	IL36G	Q9NZH8	169 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	NDUFA13	Q9P0J0	144 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	MIOX	Q9UGB7	285 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	RSL24D1	Q9UHA3	163 aa	Known RBP	8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	ST3GAL6	Q9Y274	331 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	TACC2	O95359	2948 aa		8.5	□□□□□ -1.05
CPSF7-221	ENST00000543545	CCDC168	Q8NDH2	2452 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	PRRC2A	P48634	2157 aa	Known RBP	8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	IGKV1D-17	A0A075B6S4	117 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545		A0A0G2JK05	382 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	SMIM31	A0A1B0GVY4	71 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545		A0A1W2PP11	408 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	CYSRT1	A8MQ03	144 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	SMAD7	O15105	426 aa	Known RBP	8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	FSTL3	O95633	263 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	HAND1	O96004	215 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	CHRM2	P08172	466 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	VSIG8	P0DPA2	414 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	CD37	P11049	281 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	SNRPB	P14678	240 aa	Known RBP	8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	ZNF44	P15621	663 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	MGMT	P16455	207 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	GABRR1	P24046	479 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	CEBPD	P49716	269 aa	Predicted RBP	8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	RORC	P51449	518 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	IKZF1	Q13422	519 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	SPCS2	Q15005	226 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	PIGY	Q3MUY2	71 aa		8.49	□□□□□ -1.05
CPSF7-221	ENST00000543545	SPIN3	Q5JUX0	258 aa		8.49	□□□□□ -1.05

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms