RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838		H7C1Q1	480 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	EIF1B	O60739	113 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	GLB1	P16278	677 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	PPP1CC	P36873	323 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	EIF1	P41567	113 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	POLR2G	P62487	172 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	IL13RA2	Q14627	380 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	ZNF239	Q16600	458 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	PRAMEF20	Q5VT98	475 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	FAM213B	Q8TBF2	198 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	HPSE2	Q8WWQ2	592 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	MARS2	Q96GW9	593 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	OR51M1	Q9H341	326 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	LMAN1L	Q9HAT1	526 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	B3GALT1	Q9Y5Z6	326 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	SDK1	Q7Z5N4	2213 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	LOC102725191	A0A1B0GVB3	256 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	ST8SIA3	O43173	380 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	CLN5	O75503	358 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	SNAI3	Q3KNW1	292 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	BRICD5	Q6PL45	260 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	RABEPK	Q7Z6M1	372 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	WDSUB1	Q8N9V3	476 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	C10orf35	Q96D05	121 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	C18orf12	Q96KH6	178 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	ADAMTS20	P59510	1910 aa		11.26	□□□□□ -0.61
DDX11-223	ENST00000542838	IGHV3-15	A0A0B4J1V0	119 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	FAM221A	A4D161	298 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	AP4M1	O00189	453 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	TIAF1	O95411	115 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	CHAT	P28329	748 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	EIF2S3	P41091	472 aa	Known RBP	11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	SLC22A25	Q6T423	547 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	LGI3	Q8N145	548 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	NABP1	Q96AH0	204 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	ZNF385A	Q96PM9	386 aa	Known RBP	11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	SLC2A9	Q9NRM0	540 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	DTYMK	P23919	212 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	ASCL1	P50553	236 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	CLINT1	Q14677	625 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	C10orf128	Q5T292	105 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	LRTM2	Q8N967	370 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	NAXE	Q8NCW5	288 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	OR2AE1	Q8NHA4	323 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	SGK3	Q96BR1	496 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	MALSU1	Q96EH3	234 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	HSF4	Q9ULV5	492 aa		11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	PUS1	Q9Y606	427 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
DDX11-223	ENST00000542838	CCDC187	A0A096LP49	1063 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	PHF1	O43189	567 aa	Predicted RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	DHH	O43323	396 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	S100P	P25815	95 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	OTX1	P32242	354 aa	Predicted RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	PRSS12	P56730	875 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	RAB1A	P62820	205 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SHB	Q15464	509 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838		Q6ZSR3	168 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	OR11L1	Q8NGX0	322 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SPTSSA	Q969W0	71 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	MSI2	Q96DH6	328 aa	Known RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SYT3	Q9BQG1	590 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	ASCC3	Q8N3C0	2202 aa	Known RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	IFNA17	P01571	189 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	LMO1	P25800	156 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	ITGA3	P26006	1051 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	WDR74	Q6RFH5	385 aa	Predicted RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	HIST2H3A	Q71DI3	136 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SUMF2	Q8NBJ7	301 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SMRP1	Q8NCR6	262 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	LFNG	Q8NES3	379 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	TMEM54	Q969K7	222 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SPACA9	Q96E40	222 aa	Predicted RBP	11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	RASL10B	Q96S79	203 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	RARRES2	Q99969	163 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	DEFB126	Q9BYW3	111 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	MTCH2	Q9Y6C9	303 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	IGKV1-27	A0A075B6S5	117 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	NPIPA2	E9PIF3	369 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	NPIPA3	F8WFD2	350 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	OR2C1	O95371	312 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	HIST1H3A	P68431	136 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	GNMT	Q14749	295 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	IGSF11	Q5DX21	431 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SOHLH1	Q5JUK2	328 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	NCMAP	Q5T1S8	102 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	HIST2H3PS2	Q5TEC6	136 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	FADS6	Q8N9I5	356 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	CCDC54	Q8NEL0	328 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	SPSB1	Q96BD6	273 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	OR6C1	Q96RD1	312 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	CABIN1	Q9Y6J0	2220 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838	LAMA1	P25391	3075 aa		11.24	□□□□□ -0.61
DDX11-223	ENST00000542838		K7N7A8	449 aa		11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	GPR37	O15354	613 aa		11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	PNLIP	P16233	465 aa		11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	CDCP2	Q5VXM1	449 aa		11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	MEX3B	Q6ZN04	569 aa	Known RBP	11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	SLC25A45	Q8N413	288 aa		11.23	□□□□□ -0.61
DDX11-223	ENST00000542838	GEMIN2	O14893	280 aa	Known RBP	11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms