RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 CD1AP06126 327 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 SFTPBP07988 381 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 HSMCR30P0CW71 290 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 RAB3AP20336 220 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 CPT2P23786 658 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 DUSP1P28562 367 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 PRDX2P32119 198 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 SNU13P55769 128 aaKnown RBP13.04□□□□□ -0.32
RPAIN-206ENST00000539417 RIPPLY3P57055 190 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 PAX8Q06710 450 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 LIPKQ5VXJ0 399 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 SDSLQ96GA7 329 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 DERL3Q96Q80 235 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 TMED9Q9BVK6 235 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 PPIL3Q9H2H8 161 aaKnown RBP13.04□□□□□ -0.32
RPAIN-206ENST00000539417 OR14J1Q9UGF5 321 aa13.04□□□□□ -0.32
RPAIN-206ENST00000539417 KIR2DS1A0A191URI9 304 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 ZNF879B4DU55 563 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 CD2P06729 351 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 OCMP0CE72 109 aaPredicted RBP13.03□□□□□ -0.32
RPAIN-206ENST00000539417 NPY4RP50391 375 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 SMIM21Q3B7S5 101 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 KLF17Q5JT82 389 aaPredicted RBP13.03□□□□□ -0.32
RPAIN-206ENST00000539417 SLC36A1Q7Z2H8 476 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 SATL1Q86VE3 508 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 Q9H521 79 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 NOX4Q9NPH5 578 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 ACOT13Q9NPJ3 140 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 LPAR3Q9UBY5 353 aa13.03□□□□□ -0.32
RPAIN-206ENST00000539417 NKX6-3A6NJ46 265 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 NDUFB3O43676 98 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 FSHBP01225 129 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 FAM157CP0CG43 387 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 SRD5A1P18405 259 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 TGFBR2P37173 567 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 OR3A4PP47883 348 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 RPS25P62851 125 aaKnown RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 IL13RA1P78552 427 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 EMX1Q04741 257 aaPredicted RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 UNQ9370/PRO34162Q6UXP9 181 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 MKXQ8IYA7 352 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 EMG1Q92979 244 aaKnown RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM203Q969S6 136 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 DNTTIP1Q9H147 329 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 SLC25A10Q9UBX3 287 aaPredicted RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 SF3B6Q9Y3B4 125 aaKnown RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 SOX21Q9Y651 276 aaPredicted RBP13.02□□□□□ -0.33
RPAIN-206ENST00000539417 JMJD1CQ15652 2540 aa13.02□□□□□ -0.33
RPAIN-206ENST00000539417 IGHV3OR16-10A0A075B7F0 116 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 J3QLI3 93 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 GPX5O75715 221 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 KDM4BO94953 1096 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 KNG1P01042 644 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM225BP0DP42 221 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 GATA3P23771 443 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 DLX1P56177 255 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 GABARAPL2P60520 117 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 FGF12P61328 243 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 SRSF2Q01130 221 aaKnown RBP13.01□□□□□ -0.33
RPAIN-206ENST00000539417 COL10A1Q03692 680 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 TPBGQ13641 420 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 TBCEQ15813 527 aaPredicted RBP13.01□□□□□ -0.33
RPAIN-206ENST00000539417 ACSM3Q53FZ2 586 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 DDI2Q5TDH0 399 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM185AQ8NFB2 350 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 OR10K1Q8NGX5 313 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 MGLLQ99685 303 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 NEK6Q9HC98 313 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 RPUSD1Q9UJJ7 312 aaKnown RBP13.01□□□□□ -0.33
RPAIN-206ENST00000539417 BLOC1S6Q9UL45 172 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 AUP1Q9Y679 476 aa13.01□□□□□ -0.33
RPAIN-206ENST00000539417 FBN1P35555 2871 aaKnown RBP13.01□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM82A0PJX8 343 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 SC5DO75845 299 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 ALDOBP05062 364 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 NDUFB7P17568 137 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 PRKACAP17612 351 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 FSTP19883 344 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 HNF1AP20823 631 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 PCMT1P22061 227 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 BDKRB2P30411 391 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 SRP14P37108 136 aaKnown RBP13□□□□□ -0.33
RPAIN-206ENST00000539417 PRB3Q04118 309 aaPredicted RBP13□□□□□ -0.33
RPAIN-206ENST00000539417 MLLT11Q13015 90 aaPredicted RBP13□□□□□ -0.33
RPAIN-206ENST00000539417 PDCD1Q15116 288 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 SSX1Q16384 188 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 LRRC10Q5BKY1 277 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM91Q6ZNR0 172 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 SPARTQ8N0X7 666 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 FAM58AQ8N1B3 248 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 LY6G5BQ8NDX9 201 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 H1FXQ92522 213 aaKnown RBP13□□□□□ -0.33
RPAIN-206ENST00000539417 UFD1Q92890 307 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 MED30Q96HR3 178 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 DCTN5Q9BTE1 182 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 HMG20AQ9NP66 347 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 TMEM138Q9NPI0 162 aa13□□□□□ -0.33
RPAIN-206ENST00000539417 ENSAO43768 121 aaKnown RBP12.99□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF737O75373 536 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 CDRT1O95170 752 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms