RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 EDDM3BP56851 147 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 CXCR4P61073 352 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 SLC35A2P78381 396 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 DYNC1I2Q13409 638 aaKnown RBP10.87□□□□□ -0.67
SS18-204ENST00000539244 SNAPC1Q16533 368 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 TCTEX1D4Q5JR98 221 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 BCL2L15Q5TBC7 163 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 ZNF322Q6U7Q0 402 aaPredicted RBP10.87□□□□□ -0.67
SS18-204ENST00000539244 ANGPTL5Q86XS5 388 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 HS3ST5Q8IZT8 346 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 BATF2Q8N1L9 274 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 CANT1Q8WVQ1 401 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 RCC1LQ96I51 464 aaKnown RBP10.87□□□□□ -0.67
SS18-204ENST00000539244 SNX22Q96L94 193 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 LRGUKQ96M69 825 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 CNN2Q99439 309 aaKnown RBP10.87□□□□□ -0.67
SS18-204ENST00000539244 MNTQ99583 582 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 TTTY10Q9BZA0 68 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.87□□□□□ -0.67
SS18-204ENST00000539244 MTCH1Q9NZJ7 389 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.87□□□□□ -0.67
SS18-204ENST00000539244 OR52A1Q9UKL2 312 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 HILPDAQ9Y5L2 63 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 SESN1Q9Y6P5 492 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 TMEM82A0PJX8 343 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 AQP12BA6NM10 295 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 F8VVB4 439 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 F8VWA3 439 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 H3BUI4 141 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 DNAJC8O75937 253 aaPredicted RBP10.86□□□□□ -0.67
SS18-204ENST00000539244 DUS4LO95620 317 aaKnown RBP10.86□□□□□ -0.67
SS18-204ENST00000539244 PF4V1P10720 104 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 ACTR3P61158 418 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 ESRRGP62508 458 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 SLC34A1Q06495 639 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 IL18R1Q13478 541 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 ZBTB49Q6ZSB9 765 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 AQP12AQ8IXF9 295 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 ZNF676Q8N7Q3 588 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 OR4P4Q8NGL7 312 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 DNAJC9Q8WXX5 260 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 NSL1Q96IY1 281 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 CEP19Q96LK0 163 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 APOL4Q9BPW4 351 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 LIN7BQ9HAP6 207 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 TVP23BQ9NYZ1 205 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 TSSC4Q9Y5U2 329 aaPredicted RBP10.86□□□□□ -0.67
SS18-204ENST00000539244 SNX5Q9Y5X3 404 aa10.86□□□□□ -0.67
SS18-204ENST00000539244 IGKV1-27A0A075B6S5 117 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 A0A1W2PRX2 142 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 MEX3AA1L020 520 aaKnown RBP10.85□□□□□ -0.67
SS18-204ENST00000539244 A6NIN4 97 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 ATP8B1O43520 1251 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 PRKACGP22612 351 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 CRISP1P54107 249 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 EGFEM1PQ0D2K5 195 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 NDNFQ8TB73 568 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 CCDC124Q96CT7 223 aaKnown RBP10.85□□□□□ -0.67
SS18-204ENST00000539244 AKR1E2Q96JD6 320 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 CLEC7AQ9BXN2 247 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 CADM1Q9BY67 442 aaKnown RBP10.85□□□□□ -0.67
SS18-204ENST00000539244 TMEM133Q9H2Q1 129 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 ADGRL4Q9HBW9 690 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 MRM2Q9UI43 246 aaKnown RBP10.85□□□□□ -0.67
SS18-204ENST00000539244 GTF2A1LQ9UNN4 478 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 SLC7A11Q9UPY5 501 aa10.85□□□□□ -0.67
SS18-204ENST00000539244 FAM230AA0A1W2PPH8 454 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 TCRBV4S1A1TA0A5B7 111 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 MAGEB4O15481 346 aaPredicted RBP10.84□□□□□ -0.67
SS18-204ENST00000539244 PRKYO43930 277 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 PF4P02776 101 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 CALB2P22676 271 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 HTR1DP28221 377 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 PEX2P28328 305 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 EFNB1P98172 346 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 ZNF91Q05481 1191 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 EDDM3AQ14507 147 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 UBE2V2Q15819 145 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 C11orf87Q6NUJ2 197 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 PLEKHG7Q6ZR37 379 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 MEPCEQ7L2J0 689 aaKnown RBP10.84□□□□□ -0.67
SS18-204ENST00000539244 CENPVQ7Z7K6 275 aaPredicted RBP10.84□□□□□ -0.67
SS18-204ENST00000539244 SLC35F2Q8IXU6 374 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 Q8IYB0 196 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 ENTHD1Q8IYW4 607 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 OR52N4Q8NGI2 321 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 TRMT10AQ8TBZ6 339 aaKnown RBP10.84□□□□□ -0.67
SS18-204ENST00000539244 MYDGFQ969H8 173 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 CHST5Q9GZS9 411 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 CLN6Q9NWW5 311 aa10.84□□□□□ -0.67
SS18-204ENST00000539244 PSPNO60542 156 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 GATBO75879 557 aaKnown RBP10.83□□□□□ -0.68
SS18-204ENST00000539244 MMP23AO75900 390 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 HAND1O96004 215 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 IGHA1P01876 353 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 T-ENOLP0DO92 83 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 ERP29P30040 261 aaKnown RBP10.83□□□□□ -0.68
SS18-204ENST00000539244 BRS3P32247 399 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 FUT6P51993 359 aa10.83□□□□□ -0.68
SS18-204ENST00000539244 KRTAP10-11P60412 298 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms