RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TMEM239Q8WW34 195 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 RXFP2Q8WXD0 754 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 ING5Q8WYH8 240 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 FLYWCH2Q96CP2 140 aaKnown RBP2.62□□□□□ -1.99
CD44-223ENST00000526553 CIB1Q99828 191 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 PRRG3Q9BZD7 231 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 OR52A5Q9H2C5 316 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 OR52D1Q9H346 318 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 C1orf198Q9H425 327 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 ZNF442Q9H7R0 627 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 C12orf10Q9HB07 376 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 ZDHHC4Q9NPG8 344 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 HEBP1Q9NRV9 189 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 ZNF355PQ9NSJ1 428 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 ZNF222Q9UK12 451 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 TFR2Q9UP52 801 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 AP3M1Q9Y2T2 418 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 GMEB1Q9Y692 573 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 TRPM7Q96QT4 1865 aa2.62□□□□□ -1.99
CD44-223ENST00000526553 TET2Q6N021 2002 aaPredicted RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 SMG6Q86US8 1419 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 ERICH2A1L162 156 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 ZNF705GA8MUZ8 300 aaPredicted RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 MANBAO00462 879 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RAD51BO15315 384 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RRP8O43159 456 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 EIF1BO60739 113 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 CST4P01036 141 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 TRBV12-3P01733 135 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 IGHV3-11P01762 117 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 MT-ND4P03905 459 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 CISD3P0C7P0 127 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 OR56A5P0C7T3 313 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 LCN1P31025 176 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 POLR2IP36954 125 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 EIF1P41567 113 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 DMTNQ08495 405 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 SYCNQ0VAF6 134 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 INCA1Q0VD86 236 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 TOMM34Q15785 309 aaPredicted RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 DEFB115Q30KQ5 88 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 TMEM205Q6UW68 189 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 SSX6Q7RTT6 188 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 WDFY1Q8IWB7 410 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 OR4K5Q8NGD3 323 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 OR6N1Q8NGY5 312 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 DCAKDQ8WVC6 231 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 MRPL48Q96GC5 212 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 SNF8Q96H20 258 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 GABRG3Q99928 467 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 COPS4Q9BT78 406 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RSPO3Q9BXY4 272 aaPredicted RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 COA1Q9GZY4 146 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 TREM1Q9NP99 234 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 EXOSC4Q9NPD3 245 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 RMND1Q9NWS8 449 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 SDHAF2Q9NX18 166 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RHBDL2Q9NX52 303 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RAB23Q9ULC3 237 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 NDRG2Q9UN36 371 aaKnown RBP2.61□□□□□ -1.99
CD44-223ENST00000526553 AKAP11Q9UKA4 1901 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 MAP3K19Q56UN5 1328 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 RAB3GAP2Q9H2M9 1393 aa2.61□□□□□ -1.99
CD44-223ENST00000526553 C10orf71Q711Q0 1435 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 DLEC1Q9Y238 1755 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 MGAT4DA6NG13 374 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 SC5DO75845 299 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 VAMP5O95183 116 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CTDNEP1O95476 244 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 FADS2O95864 444 aaKnown RBP2.6□□□□□ -1.99
CD44-223ENST00000526553 PTTG1O95997 202 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 HLA-DQA1P01909 254 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 RPN2P04844 631 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 RANBP1P43487 201 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 TSPAN5P62079 268 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CYP24A1Q07973 514 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 SIGLEC14Q08ET2 396 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 DYNC1I2Q13409 638 aaKnown RBP2.6□□□□□ -1.99
CD44-223ENST00000526553 MAD2L1BPQ15013 274 aaPredicted RBP2.6□□□□□ -1.99
CD44-223ENST00000526553 TNXAQ16473 311 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CDNFQ49AH0 187 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 SYT6Q5T7P8 510 aaPredicted RBP2.6□□□□□ -1.99
CD44-223ENST00000526553 HHATQ5VTY9 493 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 AP1ARQ63HQ0 302 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 NANOGP8Q6NSW7 305 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 GUSBP11Q6P575 273 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 OPN5Q6U736 354 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 RIMKLAQ8IXN7 391 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 LYPD1Q8N2G4 141 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CYB561D1Q8N8Q1 229 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 OR4D6Q8NGJ1 314 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 SFXN5Q8TD22 340 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CDS1Q92903 461 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 ZNF488Q96MN9 340 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 Q96MT0 163 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 TIMM29Q9BSF4 260 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 GGTLC1Q9BX51 225 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 FRMD8P1Q9BZ68 369 aaPredicted RBP2.6□□□□□ -1.99
CD44-223ENST00000526553 CHRNA10Q9GZZ6 450 aa2.6□□□□□ -1.99
CD44-223ENST00000526553 CHMP4BQ9H444 224 aaKnown RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms