RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CALRP27797 417 aaKnown RBP17.3■□□□□ 0.36
CD44-222ENST00000526025 ESCO2Q56NI9 601 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 SPIN3Q5JUX0 258 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 GLT8D1Q68CQ7 371 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 FAM58AQ8N1B3 248 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 MSI2Q96DH6 328 aaKnown RBP17.3■□□□□ 0.36
CD44-222ENST00000526025 SEH1LQ96EE3 360 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 SDSLQ96GA7 329 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 MED30Q96HR3 178 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 SSR3Q9UNL2 185 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 WNK2Q9Y3S1 2297 aa17.3■□□□□ 0.36
CD44-222ENST00000526025 IGKV1D-17A0A075B6S4 117 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 PPIAL4CA0A0B4J2A2 164 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 F8VVB4 439 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 F8VWA3 439 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 ANGPTL7O43827 346 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 ZNF780AO75290 641 aaPredicted RBP17.29■□□□□ 0.36
CD44-222ENST00000526025 MSMBP08118 114 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 CD36P16671 472 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 AMY2BP19961 511 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 RANBP1P43487 201 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 OR3A4PP47883 348 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 NPBWR2P48146 333 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 PITPNBP48739 271 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 MTNR1BP49286 362 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 PSMD7P51665 324 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 GMFBP60983 142 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 ZNF146Q15072 292 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 TIMM50Q3ZCQ8 353 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 LYPD2Q6UXB3 125 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 ZNF841Q6ZN19 808 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 GDPGP1Q6ZNW5 385 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 JAGN1Q8N5M9 183 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 EMG1Q92979 244 aaKnown RBP17.29■□□□□ 0.36
CD44-222ENST00000526025 SSBP3Q9BWW4 388 aaPredicted RBP17.29■□□□□ 0.36
CD44-222ENST00000526025 HMG20AQ9NP66 347 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 PCDHB16Q9NRJ7 776 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 CTSZQ9UBR2 303 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 GSTK1Q9Y2Q3 226 aa17.29■□□□□ 0.36
CD44-222ENST00000526025 GPR37O15354 613 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 SIGLEC5O15389 551 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 TMPRSS2O15393 492 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 SFTPBP07988 381 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 IL13RA1P78552 427 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 GPR176Q14439 515 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 C1orf100Q5SVJ3 147 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 C1QL2Q7Z5L3 287 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 YIPF6Q96EC8 236 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 GAFA1Q96PS6 74 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 FAM192AQ9GZU8 254 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 METTL9Q9H1A3 318 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 CNTD2Q9H8S5 307 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 RBFOX1Q9NWB1 397 aaKnown RBP17.28■□□□□ 0.36
CD44-222ENST00000526025 TXNL4BQ9NX01 149 aaKnown RBP17.28■□□□□ 0.36
CD44-222ENST00000526025 GHRLQ9UBU3 117 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 CLN8Q9UBY8 286 aa17.28■□□□□ 0.36
CD44-222ENST00000526025 TRAV20A0A0B4J274 112 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 RFPL4AA6NLU0 287 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 KIAA1324LA8MWY0 1029 aaPredicted RBP17.27■□□□□ 0.36
CD44-222ENST00000526025 RFPL4AL1F8VTS6 287 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 MYL9P24844 172 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 DVL1P1P54792 670 aaPredicted RBP17.27■□□□□ 0.36
CD44-222ENST00000526025 FGF12P61328 243 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 RSU1Q15404 277 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 NHLRC3Q5JS37 347 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 WDR25Q64LD2 544 aaPredicted RBP17.27■□□□□ 0.36
CD44-222ENST00000526025 ZNF561Q8N587 486 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 OR51T1Q8NGJ9 327 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 TBC1D15Q8TC07 691 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 S100A13Q99584 98 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 CCL13Q99616 98 aa17.27■□□□□ 0.36
CD44-222ENST00000526025 MRPS28Q9Y2Q9 187 aaKnown RBP17.27■□□□□ 0.36
CD44-222ENST00000526025 ARHGAP32A7KAX9 2087 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 PDCD5O14737 125 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 LY6G6DO95868 133 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 UBBP0CG47 229 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 PRKACAP17612 351 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 GADD45AP24522 165 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 CFPP27918 469 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 PRDX2P32119 198 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 SEC61A1P61619 476 aaKnown RBP17.26■□□□□ 0.35
CD44-222ENST00000526025 GNB2P62879 340 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 C22orf42Q6IC83 251 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 CLEC9AQ6UXN8 241 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 OR5T2Q8NGG2 359 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 OR13F1Q8NGS4 319 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 FAM234AQ9H0X4 552 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 GLS2Q9UI32 602 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 HIVEP2P31629 2446 aa17.26■□□□□ 0.35
CD44-222ENST00000526025 NDUFB3O43676 98 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 ECDO95905 644 aaPredicted RBP17.25■□□□□ 0.35
CD44-222ENST00000526025 CHRM2P08172 466 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 ZNF16P17020 682 aaPredicted RBP17.25■□□□□ 0.35
CD44-222ENST00000526025 GATA3P23771 443 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 GABRA2P47869 451 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 CAV3P56539 151 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 DGUOKQ16854 277 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 LRRC10Q5BKY1 277 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 CD276Q5ZPR3 534 aa17.25■□□□□ 0.35
CD44-222ENST00000526025 FAM166AQ6J272 317 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms