RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 USF1P22415 310 aaPredicted RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 FGF9P31371 208 aaPredicted RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 PTGFRP43088 359 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 ALDH3B2P48448 385 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 MICBQ29980 383 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 SMIM21Q3B7S5 101 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 ZNF404Q494X3 552 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 TMEM155Q4W5P6 130 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 TEX36Q5VZQ5 186 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 GLT8D1Q68CQ7 371 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 CRIP3Q6Q6R5 217 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 GDPGP1Q6ZNW5 385 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 LRRC28Q86X40 367 aaPredicted RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 CDH26Q8IXH8 852 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 Q8IYB0 196 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 SAXO1Q8IYX7 474 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 PXT1Q8NFP0 134 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 EMG1Q92979 244 aaKnown RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 FOXRED1Q96CU9 486 aaPredicted RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 SEH1LQ96EE3 360 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 KCTD7Q96MP8 289 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 S100A13Q99584 98 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 NRIP2Q9BQI9 281 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 TMEM246Q9BRR3 403 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 FUNDC2Q9BWH2 189 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 CNTD2Q9H8S5 307 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 TMEM165Q9HC07 324 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 RASL12Q9NYN1 266 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 MTCH1Q9NZJ7 389 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 PCDHB10Q9UN67 800 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 ING4Q9UNL4 249 aa8.39□□□□□ -1.07
NUP54-203ENST00000504173 AK6Q9Y3D8 172 aaKnown RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 PRKDCP78527 4128 aaKnown RBP8.39□□□□□ -1.07
NUP54-203ENST00000504173 TRAV1-2A0A0B4J238 106 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 IGKV1-12A0A0C4DH73 117 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CEACAM18A8MTB9 384 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 KDM4BO94953 1096 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CDRT1O95170 752 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 IGKV1D-12P01611 117 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 GYPAP02724 150 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CFPP27918 469 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 RPL5P46777 297 aaKnown RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 NPBWR2P48146 333 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 LOXL1Q08397 574 aaPredicted RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 RSU1Q15404 277 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 AWAT2Q6E213 333 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 FIP1L1Q6UN15 594 aaKnown RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 ACP7Q6ZNF0 438 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 DCDC5Q6ZRR9 648 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 FAM90A1Q86YD7 464 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 MAPK1IP1LQ8NDC0 245 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 OR5T2Q8NGG2 359 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 OR10K1Q8NGX5 313 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CLDND2Q8NHS1 167 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 SGMS2Q8NHU3 365 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 C12orf43Q96C57 262 aaKnown RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 UQCC2Q9BRT2 126 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CENPOQ9BU64 300 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 METTL9Q9H1A3 318 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 PLGRKTQ9HBL7 147 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 HES4Q9HCC6 221 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 RBFOX1Q9NWB1 397 aaKnown RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 NLKQ9UBE8 527 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 CDC42EP3Q9UKI2 254 aa8.38□□□□□ -1.07
NUP54-203ENST00000504173 MRPS28Q9Y2Q9 187 aaKnown RBP8.38□□□□□ -1.07
NUP54-203ENST00000504173 A0A096LNT2 108 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 SHISA3A0PJX4 238 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 NKX6-3A6NJ46 265 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 F8VVB4 439 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 F8VWA3 439 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 NDUFA2O43678 99 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 HTR3BO95264 441 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 CALCBP10092 127 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 RPS2P15880 293 aaKnown RBP8.37□□□□□ -1.07
NUP54-203ENST00000504173 PRKACAP17612 351 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 RAB3BP20337 219 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 GABRA2P47869 451 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 MTNR1BP49286 362 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 PSMD7P51665 324 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 BMXP51813 675 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 SNU13P55769 128 aaKnown RBP8.37□□□□□ -1.07
NUP54-203ENST00000504173 OR10A3P58181 314 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 ERVK11-1P61568 191 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 LSM3P62310 102 aaKnown RBP8.37□□□□□ -1.07
NUP54-203ENST00000504173 GPR107Q5VW38 600 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 STUMQ69YW2 141 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 GLIPR1L1Q6UWM5 242 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 C1QL2Q7Z5L3 287 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 FAM58AQ8N1B3 248 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 OR8B3Q8NGG8 313 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 OR4D6Q8NGJ1 314 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 RAB39BQ96DA2 213 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 OR8B2Q96RD0 313 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 GFI1Q99684 422 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 RNF167Q9H6Y7 350 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 ZNF665Q9H7R5 613 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 PATZ1Q9HBE1 687 aaKnown RBP8.37□□□□□ -1.07
NUP54-203ENST00000504173 RHOFQ9HBH0 211 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 MIOXQ9UGB7 285 aa8.37□□□□□ -1.07
NUP54-203ENST00000504173 OR14J1Q9UGF5 321 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms