RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 FOXRED1Q96CU9 486 aaPredicted RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 CCL13Q99616 98 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 UQCC2Q9BRT2 126 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 METTL9Q9H1A3 318 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 HES4Q9HCC6 221 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 RASL12Q9NYN1 266 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 V9GY05 133 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 IGKV1D-17A0A075B6S4 117 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 A0A096LNT2 108 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 A0A1B0GW55 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 A0A1W2PP11 408 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 RFPL4AA6NLU0 287 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 RFPL4AL1F8VTS6 287 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 TMPRSS2O15393 492 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 ADAM20O43506 726 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 CSTBP04080 98 aaKnown RBP9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L2P0CJ85 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L3P0CJ86 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L4P0CJ87 422 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L5P0CJ88 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L6P0CJ89 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L7P0CJ90 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 PSG2P11465 335 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 HTR2CP28335 458 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 CLDN12P56749 244 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 VBP1P61758 197 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 LOXL1Q08397 574 aaPredicted RBP9.94□□□□□ -0.82
CUX1-210ENST00000497815 RAB11BQ15907 218 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 C1orf100Q5SVJ3 147 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 STUMQ69YW2 141 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4L9Q6RFH8 374 aaPredicted RBP9.94□□□□□ -0.82
CUX1-210ENST00000497815 FIP1L1Q6UN15 594 aaKnown RBP9.94□□□□□ -0.82
CUX1-210ENST00000497815 DCDC5Q6ZRR9 648 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 NR2C2APQ86WQ0 139 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 ANKRD13BQ86YJ7 626 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 OR6M1Q8NGM8 313 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 C12orf43Q96C57 262 aaKnown RBP9.94□□□□□ -0.82
CUX1-210ENST00000497815 KCNK15Q9H427 330 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 ZNF665Q9H7R5 613 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 HMG20AQ9NP66 347 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 DUX4Q9UBX2 424 aa9.94□□□□□ -0.82
CUX1-210ENST00000497815 PRRC2AP48634 2157 aaKnown RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 NKX6-3A6NJ46 265 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SLC17A2O00624 439 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SLC22A1O15245 554 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 CRTAPO75718 401 aaPredicted RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 GABARAPO95166 117 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 FSTL3O95633 263 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 KNG1P01042 644 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 IGHV2-5P01817 119 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 HEXAP06865 529 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SLC2A2P11168 524 aaPredicted RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 PRDX2P32119 198 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SERPINB10P48595 397 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 PSMD7P51665 324 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SEC61A1P61619 476 aaKnown RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 LMO4P61968 165 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SCN1BQ07699 218 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 IKZF1Q13422 519 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 PDCD1Q15116 288 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 PIGYQ3MUY2 71 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 OR10K2Q6IF99 312 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 METAP1DQ6UB28 335 aaPredicted RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 ASCL4Q6XD76 172 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 SPNS3Q6ZMD2 512 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 TPRA1Q86W33 373 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 CD177Q8N6Q3 437 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 FAM216BQ8N7L0 139 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 ANGPTL6Q8NI99 470 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 TBC1D15Q8TC07 691 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 FAM46BQ96A09 425 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 RAB39BQ96DA2 213 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 BANF2Q9H503 90 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 PATZ1Q9HBE1 687 aaKnown RBP9.93□□□□□ -0.82
CUX1-210ENST00000497815 LPAR2Q9HBW0 351 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 CTSZQ9UBR2 303 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 NOTCH2Q04721 2471 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 ARID1AO14497 2285 aa9.93□□□□□ -0.82
CUX1-210ENST00000497815 A0A0B4J203 849 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 A0A0G2JK05 382 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 IFITM5A6NNB3 132 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 TNFRSF13BO14836 293 aaPredicted RBP9.92□□□□□ -0.82
CUX1-210ENST00000497815 NDUFA2O43678 99 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 ZNF780AO75290 641 aaPredicted RBP9.92□□□□□ -0.82
CUX1-210ENST00000497815 HAND1O96004 215 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 WNT2P09544 360 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 CD37P11049 281 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 SELLP14151 372 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 AMY2BP19961 511 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 PITPNBP48739 271 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 CAPZA1P52907 286 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 FGF12P61328 243 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 CTF1Q16619 201 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 DGUOKQ16854 277 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 NLRC3Q7RTR2 1065 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 SLC36A1Q7Z2H8 476 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 OSR2Q8N2R0 312 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 FGFRL1Q8N441 504 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 TMEM104Q8NE00 496 aa9.92□□□□□ -0.82
CUX1-210ENST00000497815 OR8B3Q8NGG8 313 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms