RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 TMBIM1Q969X1 311 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 C8orf44Q96CB5 159 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 NRBF2Q96F24 287 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 RMND5BQ96G75 393 aaPredicted RBP3.06□□□□□ -1.92
PTCD3-216ENST00000487043 IP6K3Q96PC2 410 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 SLC29A1Q99808 456 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ARHGDIGQ99819 225 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 CIB1Q99828 191 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 WFDC6Q9BQY6 131 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 C9orf16Q9BUW7 83 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 OSBPL10Q9BXB5 764 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 DEFB126Q9BYW3 111 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 YIPF3Q9GZM5 350 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 RBKSQ9H477 322 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ARMC7Q9H6L4 198 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 REEP1Q9H902 201 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 CACYBPQ9HB71 228 aaKnown RBP3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ASCL3Q9NQ33 180 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 C8orf4Q9NR00 106 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 UBQLN4Q9NRR5 601 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ACER3Q9NUN7 267 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 KLHL28Q9NXS3 571 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ABCG2Q9UNQ0 655 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF443Q9Y2A4 671 aaPredicted RBP3.06□□□□□ -1.92
PTCD3-216ENST00000487043 FAM32AQ9Y421 112 aaKnown RBP3.06□□□□□ -1.92
PTCD3-216ENST00000487043 ENPP4Q9Y6X5 453 aa3.06□□□□□ -1.92
PTCD3-216ENST00000487043 FAM186AA6NE01 2351 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SDK2Q58EX2 2172 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PTPRBP23467 1997 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PPIAL4EA0A075B759 164 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 IGHV3-35A0A0C4DH35 117 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 TRBV11-1A0A0K0K1C0 115 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 A0A1W2PQD3 144 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 OR6C70A6NIJ9 312 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 CLDN24A6NM45 220 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 TNFRSF11BO00300 401 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 WWP2O00308 870 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 FFAR1O14842 300 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RNF13O43567 381 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 FADS1O60427 444 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF354AO60765 605 aaPredicted RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 UGT2B11O75310 529 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 E2F6O75461 281 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 OR5F1O95221 314 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 GADD45GO95257 159 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 LYPD3O95274 346 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 UTS2O95399 124 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 LALBAP00709 142 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 GAPDHP04406 335 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SERPINA7P05543 415 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 OR8U8P0C7N1 319 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RBMY1CP0DJD4 496 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PPIAL4FP0DN26 164 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 LIPCP11150 499 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 HPGDP15428 266 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 GDF1P27539 372 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 IL12BP29460 328 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 HTR1FP30939 366 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RRM2P31350 389 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 IFNA8P32881 189 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 YAP1P46937 504 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF136P52737 540 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SMIM11AP58511 58 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PLCXD2Q0VAA5 305 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 DGCR6Q14129 220 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 NNATQ16517 81 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 NRF1Q16656 503 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 HIGD2BQ4VC39 106 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 MRPL2Q5T653 305 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 H3F3CQ6NXT2 135 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 TBPL2Q6SJ96 375 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 IZUMO2Q6UXV1 221 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF836Q6ZNA1 936 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PGAP1Q75T13 922 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF550Q7Z398 422 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 TMEM179BQ7Z7N9 219 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 COMTD1Q86VU5 262 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 CYP4Z1Q86W10 505 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RPS19BP1Q86WX3 136 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RAB43Q86YS6 212 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 CBR4Q8N4T8 237 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 LINC00471Q8N535 108 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RHOXF1Q8NHV9 184 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SLC22A8Q8TCC7 542 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PHF10Q8WUB8 498 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 DNAJC9Q8WXX5 260 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 FGF11Q92914 225 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 HGDQ93099 445 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 KIAA1143Q96AT1 154 aaPredicted RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 HAVCR1Q96D42 359 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 RDH12Q96NR8 316 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 GAL3ST1Q99999 423 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 POLR2J2Q9GZM3 115 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 GABARAPL1Q9H0R8 117 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 POLR2J3Q9H1A7 115 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PPA2Q9H2U2 334 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ANKRD19PQ9H560 264 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 NMNAT1Q9HAN9 279 aaPredicted RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF160Q9HCG1 818 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 VNN3Q9NY84 501 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms