RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	MICU1	Q9BPX6	476 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	TMED9	Q9BVK6	235 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	PAPOLG	Q9BWT3	736 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	CLEC7A	Q9BXN2	247 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	NSRP1	Q9H0G5	558 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	IKZF5	Q9H5V7	419 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	TMEM38A	Q9H6F2	299 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	TUBA4B	Q9H853	241 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	NMNAT1	Q9HAN9	279 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	KRCC1	Q9NPI7	259 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	TAGLN3	Q9UI15	199 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	PYCARD	Q9ULZ3	195 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	A4GNT	Q9UNA3	340 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	RHBDD3	Q9Y3P4	386 aa		4.09	□□□□□ -1.75
PTPN4-210	ENST00000485247	KMT2A	Q03164	3969 aa		4.09	□□□□□ -1.76
PTPN4-210	ENST00000485247		A0A1B0GVY2	172 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ANXA2P2	A6NMY6	339 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SOCS2	O14508	198 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SDHD	O14521	159 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	TYROBP	O43914	113 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	MTRF1	O75570	445 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	RBP4	P02753	201 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM106CP	P0CH98	169 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	HOXB9	P17482	250 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	TNFRSF1B	P20333	461 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	PRDX2	P32119	198 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	RPS27	P42677	84 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	OR1E2	P47887	323 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	PRKX	P51817	358 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	POLR2J	P52435	117 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ARHGDIB	P52566	201 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ABCE1	P61221	599 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM3A	P98173	230 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ZNF616	Q08AN1	781 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	HNF4G	Q14541	408 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	LGALS9C	Q6DKI2	356 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	DRAM2	Q6UX65	266 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	MSANTD1	Q6ZTZ1	278 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	PTCHD4	Q6ZW05	846 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SLC16A9	Q7RTY1	509 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM122B	Q7Z309	247 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	CATSPERD	Q86XM0	798 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ZNF561	Q8N587	486 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	OR2C3	Q8N628	320 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	C5orf56	Q8N8D9	126 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SLC26A7	Q8TE54	656 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	ARPC1A	Q92747	370 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	DLX4	Q92988	240 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	RNF170	Q96K19	258 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	PKNOX2	Q96KN3	472 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SORT1	Q99523	831 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	RTL8A	Q9BWD3	113 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	GHITM	Q9H3K2	345 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	OPA3	Q9H6K4	179 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	VAPA	Q9P0L0	249 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	DPM3	Q9P2X0	92 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	HHLA2	Q9UM44	414 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	SH3GLB1	Q9Y371	365 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247	RAP2C	Q9Y3L5	183 aa		4.08	□□□□□ -1.76
PTPN4-210	ENST00000485247		A0A087WWL8	130 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM172BP	A6NC97	362 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	TMEM210	A6NLX4	147 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	ZNF850	A8MQ14	1090 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	EFCAB9	A8MZ26	197 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	LEUTX	A8MZ59	168 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	AP4M1	O00189	453 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	HSPA12A	O43301	675 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	XRCC2	O43543	280 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	IGHG2	P01859	326 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	HLA-DQA2	P01906	255 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	TK1	P04183	234 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	IDO1	P14902	403 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	GPX2	P18283	190 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	PPIB	P23284	216 aa	Known RBP	4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	DCTD	P32321	178 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	CDKN2A	P42771	156 aa	Known RBP	4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	EDDM3B	P56851	147 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	GNB1	P62873	340 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	PRDX4	Q13162	271 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	RAB32	Q13637	225 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	HES1	Q14469	280 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	TIGD6	Q17RP2	521 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	ZIK1	Q3SY52	487 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	FAM76B	Q5HYJ3	339 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	LRIF1	Q5T3J3	769 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	ACSM6	Q6P461	480 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	DNM1P34	Q6PK57	102 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	BAIAP2L2	Q6UXY1	529 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	ZBTB49	Q6ZSB9	765 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	CCDC80	Q76M96	950 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	NRM	Q8IXM6	262 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	BATF2	Q8N1L9	274 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	RNF152	Q8N8N0	203 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	C11orf65	Q8NCR3	313 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	TRMT10A	Q8TBZ6	339 aa	Known RBP	4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	OR5P3	Q8WZ94	311 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	SPSB4	Q96A44	273 aa		4.07	□□□□□ -1.76
PTPN4-210	ENST00000485247	SGK3	Q96BR1	496 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms