RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 FAM58AQ8N1B3 248 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 CHST4Q8NCG5 386 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 OR10R2Q8NGX6 335 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 DEDD2Q8WXF8 326 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 NEUROG1Q92886 237 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 DVL3Q92997 716 aaPredicted RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 TRAF4Q9BUZ4 470 aaPredicted RBP8.6□□□□□ -1.03
USP39-215ENST00000481409 LPAR5Q9H1C0 372 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 DLL4Q9NR61 685 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 PPP1R3CQ9UQK1 317 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 PLCE1Q9P212 2302 aa8.6□□□□□ -1.03
USP39-215ENST00000481409 UBR5O95071 2799 aaPredicted RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 RAI1Q7Z5J4 1906 aaPredicted RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 SMG1Q96Q15 3661 aaKnown RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 RAB27BO00194 218 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 SYNGR1O43759 233 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 ANGPTL7O43827 346 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 NXPH2O95156 264 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 CLDN1O95832 211 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 KNG1P01042 644 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 LHBP01229 141 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 SFTPBP07988 381 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 MELTFP08582 738 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 MUC1P15941 1255 aaPredicted RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 CDK2P24941 298 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 SSTR2P30874 369 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 IL18Q14116 193 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 KCNJ8Q15842 424 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 PNLIPRP3Q17RR3 467 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 DMRTC1Q5HYR2 192 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 RNF144BQ7Z419 303 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 MFSD4AQ8N468 514 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 TMEM104Q8NE00 496 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 OR4M1Q8NGD0 313 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 ITLN1Q8WWA0 313 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 GTF3AQ92664 365 aaKnown RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 BORCS5Q969J3 196 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 SLAMF9Q96A28 289 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 SELENOIQ9C0D9 397 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 CLEC4MQ9H2X3 399 aaPredicted RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 SCPEP1Q9HB40 452 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 GCM1Q9NP62 436 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 MYOZ1Q9NP98 299 aaPredicted RBP8.59□□□□□ -1.03
USP39-215ENST00000481409 C1orf123Q9NWV4 160 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 RNF7Q9UBF6 113 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 ST3GAL6Q9Y274 331 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 V9GYH0 126 aa8.59□□□□□ -1.03
USP39-215ENST00000481409 hCG_1807616A0A1W2PRN6 198 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 GABARAPH6UMI1 98 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 SH2D1BO14796 132 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 NDUFA2O43678 99 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 GSTZ1O43708 216 aaPredicted RBP8.58□□□□□ -1.04
USP39-215ENST00000481409 RHBDL1O75783 438 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 PLATP00750 562 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 CD8AP01732 235 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 BCL3P20749 454 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 FUT3P21217 361 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 GLRA1P23415 457 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 CBX5P45973 191 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 KCNJ3P48549 501 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 EFNB2P52799 333 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 TAS2R20P59543 309 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 CCL8P80075 99 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 RBM39Q14498 530 aaKnown RBP8.58□□□□□ -1.04
USP39-215ENST00000481409 SHEQ5VZ18 495 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 ACP7Q6ZNF0 438 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 DNM1P46Q6ZS02 220 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 Q6ZTK2 550 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 LRRC29Q8WV35 223 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 ZFAND2BQ8WV99 257 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 EMG1Q92979 244 aaKnown RBP8.58□□□□□ -1.04
USP39-215ENST00000481409 RAB3CQ96E17 227 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 NEDD4LQ96PU5 975 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 SRRQ9GZT4 340 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 DNTTIP1Q9H147 329 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 BANF2Q9H503 90 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 PLEKHF2Q9H8W4 249 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 TAS2R8Q9NYW2 309 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 TREM2Q9NZC2 230 aa8.58□□□□□ -1.04
USP39-215ENST00000481409 ZNF107Q9UII5 783 aaPredicted RBP8.58□□□□□ -1.04
USP39-215ENST00000481409 RELNP78509 3460 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 ADGRG4Q8IZF6 3080 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 IGHV1-69-2A0A0G2JMI3 117 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 ISPDA4D126 451 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 FOXI3A8MTJ6 420 aaPredicted RBP8.57□□□□□ -1.04
USP39-215ENST00000481409 H7C1Q1 480 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 PDCD6O75340 191 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 HLA-DQB1P01920 261 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 HIST1H1DP16402 221 aaKnown RBP8.57□□□□□ -1.04
USP39-215ENST00000481409 PRKACAP17612 351 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 LMO1P25800 156 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 BLVRBP30043 206 aaPredicted RBP8.57□□□□□ -1.04
USP39-215ENST00000481409 PRSS3P35030 304 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 MDH2P40926 338 aaKnown RBP8.57□□□□□ -1.04
USP39-215ENST00000481409 NPBWR2P48146 333 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 PTH2RP49190 550 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 VEGFCP49767 419 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 MPPED2Q15777 294 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 HFEQ30201 348 aa8.57□□□□□ -1.04
USP39-215ENST00000481409 ZNF260Q3ZCT1 412 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms