RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 A0A1W2PRV1 198 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 FAM90A8PA6NJQ4 464 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 SAC3D1A6NKF1 404 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 VGLL3A8MV65 326 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 ODF3BA8MYP8 253 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 GATBO75879 557 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 TMED1Q13445 227 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 C2orf68Q2NKX9 166 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 TP53I3Q53FA7 332 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 LDLRAD2Q5SZI1 272 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 SLC25A26Q70HW3 274 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 OR8H2Q8N162 312 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 OR4C13Q8NGP0 309 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 GNG8Q9UK08 70 aa15.22■□□□□ 0.03
CCDC88B-206ENST00000473405 TMEM82A0PJX8 343 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 ATP5HO75947 161 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 RBP4P02753 201 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 CHRM2P08172 466 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 UBCP0CG48 685 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 KIR2DS4P43632 304 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 FUT6P51993 359 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 RDH10Q8IZV5 341 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 CCDC54Q8NEL0 328 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 RFKQ969G6 155 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 RANBP3Q9H6Z4 567 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 RAB18Q9NP72 206 aa15.21■□□□□ 0.03
CCDC88B-206ENST00000473405 IGKV1-9A0A0C4DH69 117 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 J3QRE1 110 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 INMTO95050 263 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF728P0DKX0 622 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 ATP6V1E1P36543 226 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 LGALS4P56470 323 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 EDDM3BP56851 147 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 HERPUD1Q15011 391 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF626Q68DY1 528 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 HIST2H2BDQ6DRA6 164 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 LIAT1Q6ZQX7 453 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 FAM220AQ7Z4H9 259 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 FAM110DQ8TAY7 271 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 PP6455Q8WZ26 134 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 CFHR4Q92496 578 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 C10orf35Q96D05 121 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 ADAT3Q96EY9 351 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 BORCS8Q96FH0 119 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 RBFOX1Q9NWB1 397 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 FOXJ3Q9UPW0 622 aa15.2■□□□□ 0.02
CCDC88B-206ENST00000473405 IGHA1P01876 353 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 ALPLP05186 524 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 IGHV1-8P0DP01 117 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 NANOS3P60323 173 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 CDC42P60953 191 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 CNN3Q15417 329 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 PLA1AQ53H76 456 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 C11orf88Q6PI97 169 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 GDPD3Q7L5L3 318 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 KLHDC1Q8N7A1 406 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 DNAAF1Q8NEP3 725 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 OR11H6Q8NGC7 330 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 OR2G2Q8NGZ5 317 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 PYDC1Q8WXC3 89 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 EMG1Q92979 244 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 ADI1Q9BV57 179 aa15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 TBL2Q9Y4P3 447 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-206ENST00000473405 TRBV2A0A0J9YWF9 115 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 E9PQ18 207 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 PLXNB1O43157 2135 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 ENTPD6O75354 484 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 HAND1O96004 215 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 SERPINA3P01011 423 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 ARG1P05089 322 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 CSF1P09603 554 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 NPBWR2P48146 333 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 RAB13P51153 203 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 ZNF91Q05481 1191 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 EDDM3AQ14507 147 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 CCBE1Q6UXH8 406 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 EGFL6Q8IUX8 553 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 Q8IYB0 196 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 OR52N4Q8NGI2 321 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 OR13D1Q8NGV5 346 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 OR2T6Q8NHC8 308 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 FOXRED1Q96CU9 486 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 HRASLS5Q96KN8 279 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 SNX22Q96L94 193 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 NPFFR1Q9GZQ6 430 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 CHST6Q9GZX3 395 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 SEBOXQ9HB31 216 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 IMPAD1Q9NX62 359 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 FRRS1LQ9P0K9 344 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 TCF19Q9Y242 345 aa15.18■□□□□ 0.02
CCDC88B-206ENST00000473405 PSPNO60542 156 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 CIB2O75838 187 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 ISG15P05161 165 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 BCL3P20749 454 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 RBP2P50120 134 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 MEF2CQ06413 473 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 SLC25A30Q5SVS4 291 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 FDX2Q6P4F2 183 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 Q6ZTK2 550 aa15.17■□□□□ 0.02
CCDC88B-206ENST00000473405 UTS2BQ765I0 119 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms