RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ECDO95905 644 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 SEC61A1P61619 476 aaKnown RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 RPS25P62851 125 aaKnown RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 SPIN3Q5JUX0 258 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 FAM58AQ8N1B3 248 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF561Q8N587 486 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 JAGN1Q8N5M9 183 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 PXT1Q8NFP0 134 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 TSPAN14Q8NG11 270 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 ELL3Q9HB65 397 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-204ENST00000463487 CTSZQ9UBR2 303 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 HIVEP2P31629 2446 aa16.49■□□□□ 0.23
COL9A3-204ENST00000463487 IGKV1D-17A0A075B6S4 117 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 LOC105371242A0A075B767 164 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 RFPL4AA6NLU0 287 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 RFPL4AL1F8VTS6 287 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 GABRPO00591 440 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 DVL1O14640 695 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 SIGLEC5O15389 551 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ANGPTL7O43827 346 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 SC5DO75845 299 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 KDM4BO94953 1096 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 MAS1P04201 325 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 UCHL1P09936 223 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 BCL3P20749 454 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 PRDX2P32119 198 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ZP1P60852 638 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 IKZF1Q13422 519 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 RSU1Q15404 277 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF788Q6ZQV5 615 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 BATF2Q8N1L9 274 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 FAM216BQ8N7L0 139 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ST8SIA4Q92187 359 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 FOXRED1Q96CU9 486 aaPredicted RBP16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ORAI1Q96D31 301 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF696Q9H7X3 374 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 OR14J1Q9UGF5 321 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 CDC42EP3Q9UKI2 254 aa16.48■□□□□ 0.23
COL9A3-204ENST00000463487 ENSAO43768 121 aaKnown RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF780AO75290 641 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 CSTBP04080 98 aaKnown RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 CHRM2P08172 466 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 PRKACAP17612 351 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 GALP22466 123 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 ZFP36P26651 326 aaKnown RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 PTGFRP43088 359 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 RANBP1P43487 201 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 CAPZA1P52907 286 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 GPR176Q14439 515 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 NEDD8Q15843 81 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 CR1LQ2VPA4 569 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 FAHD2BQ6P2I3 314 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF841Q6ZN19 808 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 TMEM185AQ8NFB2 350 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 SDSLQ96GA7 329 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 FAHD2AQ96GK7 314 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 GAFA1Q96PS6 74 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 NR1H4Q96RI1 486 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 SHARPINQ9H0F6 387 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 METTL9Q9H1A3 318 aa16.47■□□□□ 0.23
COL9A3-204ENST00000463487 RBFOX1Q9NWB1 397 aaKnown RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 SLC25A10Q9UBX3 287 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-204ENST00000463487 KIAA1324LA8MWY0 1029 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-204ENST00000463487 PIN1P1O15428 100 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 LIPFP07098 398 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 SRMP19623 302 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 NPBWR2P48146 333 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 MTNR1BP49286 362 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 INSL4Q14641 139 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 SSX1Q16384 188 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 GLT8D1Q68CQ7 371 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 RAB40AQ8WXH6 277 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 UQCC2Q9BRT2 126 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 MRI1Q9BV20 369 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 SEBOXQ9HB31 216 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-204ENST00000463487 HMG20AQ9NP66 347 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 ZNF222Q9UK12 451 aa16.46■□□□□ 0.23
COL9A3-204ENST00000463487 SF3B6Q9Y3B4 125 aaKnown RBP16.46■□□□□ 0.23
COL9A3-204ENST00000463487 ABCA2Q9BZC7 2435 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 INAFM1C9JVW0 142 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 SH2D1BO14796 132 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 OR3A4PP47883 348 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 CAV3P56539 151 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 FABP5Q01469 135 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 FAM27D1Q5T7N8 215 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 SYT6Q5T7P8 510 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-204ENST00000463487 NUDT16L1Q9BRJ7 211 aaKnown RBP16.45■□□□□ 0.22
COL9A3-204ENST00000463487 FAM234AQ9H0X4 552 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 IL36GQ9NZH8 169 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 ING4Q9UNL4 249 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 TLN2Q9Y4G6 2542 aa16.45■□□□□ 0.22
COL9A3-204ENST00000463487 MALRD1Q5VYJ5 2156 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 DOCK11Q5JSL3 2073 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 IGHV2-70DA0A0C4DH43 119 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 IGKV1-12A0A0C4DH73 117 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 HAND1O96004 215 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 IGKV1D-12P01611 117 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 NDUFB7P17568 137 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 MYL9P24844 172 aa16.44■□□□□ 0.22
COL9A3-204ENST00000463487 CALRP27797 417 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms