RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SSX3Q99909 188 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 PPA2Q9H2U2 334 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 RAB18Q9NP72 206 aa11.37□□□□□ -0.59
USP4-206ENST00000461553 NOTCH1P46531 2555 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 IGKV1-27A0A075B6S5 117 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 DAPL1A0PJW8 107 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 H3BNX3 289 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 K7N7A8 449 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 HTR1AP08908 422 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 OCM2P0CE71 109 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 OCMP0CE72 109 aaPredicted RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 POU3F4P49335 361 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 RBP2P50120 134 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 BMXP51813 675 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 ATP1B3P54709 279 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 SNRPGP62308 76 aaKnown RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 ZIK1Q3SY52 487 aaPredicted RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 ZNF782Q6ZMW2 699 aaPredicted RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 ENTHD1Q8IYW4 607 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 OR8H2Q8N162 312 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 OR2G2Q8NGZ5 317 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 C17orf50Q8WW18 174 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 UBE2FQ969M7 185 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 MRPL48Q96GC5 212 aaKnown RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 MYCBPQ99417 103 aaPredicted RBP11.36□□□□□ -0.59
USP4-206ENST00000461553 C16orf95Q9H693 158 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 TCF7L1Q9HCS4 588 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 MTCH1Q9NZJ7 389 aa11.36□□□□□ -0.59
USP4-206ENST00000461553 SLC16A6O15403 523 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 ZNF737O75373 536 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 TSPAN9O75954 239 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 INMTO95050 263 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 HAND1O96004 215 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 RBP4P02753 201 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 PRKACBP22694 351 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 AZGP1P25311 298 aaKnown RBP11.35□□□□□ -0.59
USP4-206ENST00000461553 EDDM3AQ14507 147 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 LY6EQ16553 131 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 AANATQ16613 207 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 OCLNQ16625 522 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 SLC25A30Q5SVS4 291 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 LHFPL2Q6ZUX7 228 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 KCTD20Q7Z5Y7 419 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 C10orf67Q8IYJ2 551 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 RDH10Q8IZV5 341 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 CBR4Q8N4T8 237 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 DNAAF1Q8NEP3 725 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 OR4C13Q8NGP0 309 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 SPSB1Q96BD6 273 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 FOXRED1Q96CU9 486 aaPredicted RBP11.35□□□□□ -0.59
USP4-206ENST00000461553 ADAT3Q96EY9 351 aaPredicted RBP11.35□□□□□ -0.59
USP4-206ENST00000461553 OPALINQ96PE5 141 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 MMP27Q9H306 513 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 HHLA2Q9UM44 414 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 GMPPBQ9Y5P6 360 aa11.35□□□□□ -0.59
USP4-206ENST00000461553 TRBV2A0A0J9YWF9 115 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 C17orf98A8MV24 154 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 F8VVB4 439 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 F8VWA3 439 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ISG15P05161 165 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ZNF728P0DKX0 622 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ATF1P18846 271 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 GABRA5P31644 462 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 OR12D2P58182 307 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 KRTAP10-3P60369 221 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ZNF91Q05481 1191 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 FDX2Q6P4F2 183 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 LIAT1Q6ZQX7 453 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 UTS2BQ765I0 119 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 EGFL6Q8IUX8 553 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ACBD7Q8N6N7 88 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 OR13C3Q8NGS6 347 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 OR13D1Q8NGV5 346 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 C4orf36Q96KX1 117 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 SNX22Q96L94 193 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 ZNF714Q96N38 554 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 MBOAT4Q96T53 435 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 C9orf16Q9BUW7 83 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 MEGF9Q9H1U4 602 aa11.34□□□□□ -0.59
USP4-206ENST00000461553 RBFOX1Q9NWB1 397 aaKnown RBP11.34□□□□□ -0.59
USP4-206ENST00000461553 hADV38S2A0JD32 116 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 MEX3AA1L020 520 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 J3QLW9 94 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 J3QRE1 110 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 MPZL2O60487 215 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 ARG1P05089 322 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 DBTP11182 482 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 ZNF19P17023 458 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 PRKACAP17612 351 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 BCL3P20749 454 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 GABRR1P24046 479 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 PEX2P28328 305 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 CCR9P51686 369 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 SNU13P55769 128 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 DLX6P56179 175 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 MTCP1P56278 107 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 NANOS3P60323 173 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 GRK1Q15835 563 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 C2orf68Q2NKX9 166 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 SPIN3Q5JUX0 258 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms