RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 GGNBP1Q5YKI7 109 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 RAB11FIP2Q7L804 512 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 NAXEQ8NCW5 288 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 FNDC9Q8TBE3 224 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ADAMTS17Q8TE56 1095 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ZPBPQ9BS86 351 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 SLC7A11Q9UPY5 501 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 COL6A3P12111 3177 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 IGKV3D-15A0A087WSY6 115 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF816-ZNF321PA0A0X1KG74 233 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 XRCC2O43543 280 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ATG12O94817 140 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 IGHV3-9P01782 118 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 PIGPP57054 158 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 COLCA1Q6ZS62 124 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 PIGCQ92535 297 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 MRPL24Q96A35 216 aaKnown RBP13.85□□□□□ -0.19
SHQ1-202ENST00000444040 THOC3Q96J01 351 aaKnown RBP13.85□□□□□ -0.19
SHQ1-202ENST00000444040 TAAR9Q96RI9 348 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 PRDM14Q9GZV8 571 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 C12orf4Q9NQ89 552 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 OR2S2Q9NQN1 319 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 NEURL1O76050 574 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 ADCYAP1P18509 176 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 AKR1C2P52895 323 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 AKR1C1Q04828 323 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 PLCXD3Q63HM9 321 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 Q6ZPA2 131 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 CALHM1Q8IU99 346 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 FOXRED2Q8IWF2 684 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 OR4A4PQ8NGN8 299 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 BOKQ9UMX3 212 aaPredicted RBP13.84□□□□□ -0.19
SHQ1-202ENST00000444040 FAM221AA4D161 298 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 ABCD4O14678 606 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 TAAR5O14804 337 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF728P0DKX0 622 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 SRSF3P84103 164 aaKnown RBP13.84□□□□□ -0.19
SHQ1-202ENST00000444040 RPL7L1Q6DKI1 246 aaKnown RBP13.84□□□□□ -0.19
SHQ1-202ENST00000444040 OR2A2Q6IF42 318 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 TOMM40LQ969M1 308 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 ARL11Q969Q4 196 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 GALNT14Q96FL9 552 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 NKX6-2Q9C056 277 aaPredicted RBP13.84□□□□□ -0.19
SHQ1-202ENST00000444040 LPAR3Q9UBY5 353 aa13.84□□□□□ -0.19
SHQ1-202ENST00000444040 NOSIPQ9Y314 301 aaKnown RBP13.84□□□□□ -0.19
SHQ1-202ENST00000444040 FAM74A7A6NL05 159 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 C9orf172C9J069 976 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 DEDDO75618 318 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 FARS2O95363 451 aaKnown RBP13.83□□□□□ -0.19
SHQ1-202ENST00000444040 TMEM187Q14656 261 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 FAM74A3Q4VXF1 159 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 PDSS1Q5T2R2 415 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 TECTBQ96PL2 329 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 SLC7A10Q9NS82 523 aa13.83□□□□□ -0.19
SHQ1-202ENST00000444040 NUDT19A8MXV4 375 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 LINC01387J3KSC0 135 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 PDCD6O75340 191 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 MRPL33O75394 65 aaKnown RBP13.83□□□□□ -0.2
SHQ1-202ENST00000444040 LHX2P50458 406 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 RBM11P57052 281 aaKnown RBP13.83□□□□□ -0.2
SHQ1-202ENST00000444040 PDCD1Q15116 288 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 SLC22A25Q6T423 547 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 OR2M7Q8NG81 312 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 SIGLEC12Q96PQ1 595 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 DDA1Q9BW61 102 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 ZNF703Q9H7S9 590 aaPredicted RBP13.83□□□□□ -0.2
SHQ1-202ENST00000444040 NAA60Q9H7X0 242 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 MMP26Q9NRE1 261 aa13.83□□□□□ -0.2
SHQ1-202ENST00000444040 IFNA21P01568 189 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 CELA3AP09093 270 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ZNF883P0CG24 379 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 RPL12P30050 165 aaKnown RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 SP6Q3SY56 376 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 RTN4IP1Q8WWV3 396 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 SMIM8Q96KF7 97 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 FAM173AQ9BQD7 235 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 LINC00470Q9BZP3 86 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ATPIF1Q9UII2 106 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 KCNIP3Q9Y2W7 256 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ZNF705EA8MWA4 302 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 OR5AC1P0C628 307 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 FCGR2CP31995 323 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 RFC3P40938 356 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 C10orf91Q5T1B1 145 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 STRADBQ9C0K7 418 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 TAF9BQ9HBM6 251 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 TOR1AO14656 332 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 RCC1P18754 421 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 CLDN18P56856 261 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ARF1P84077 181 aaKnown RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 CCDC157Q569K6 752 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 TMEM268Q5VZI3 342 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ZNF611Q8N823 705 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 LRTM2Q8N967 370 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 Q8NFD4 153 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 SAT2Q96F10 170 aaPredicted RBP13.82□□□□□ -0.2
SHQ1-202ENST00000444040 PRRX2Q99811 253 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 HES7Q9BYE0 225 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 ZNF286AQ9HBT8 521 aa13.82□□□□□ -0.2
SHQ1-202ENST00000444040 AMDHD2Q9Y303 409 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms