RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 HIST1H2BDP58876 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST1H2BCP62807 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST2H2BEQ16778 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.5□□□□□ -1.21
HPS4-206ENST00000439453 GFI1BQ5VTD9 330 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 AVL9Q8NBF6 648 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 CCDC54Q8NEL0 328 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 LFNGQ8NES3 379 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 Q8WTZ3 238 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 RNF133Q8WVZ7 376 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 OIT3Q8WWZ8 545 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST1H2BHQ93079 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 JSRP1Q96MG2 331 aaPredicted RBP7.5□□□□□ -1.21
HPS4-206ENST00000439453 TGM7Q96PF1 710 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 ADOQ96SZ5 270 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST1H2BNQ99877 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST1H2BMQ99879 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 GPR61Q9BZJ8 451 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 NXF5Q9H1B4 397 aaKnown RBP7.5□□□□□ -1.21
HPS4-206ENST00000439453 OCIAD1Q9NX40 245 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 PCNX3Q9H6A9 2034 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 A0A087X0M5 115 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 IGHV5-51A0A0C4DH38 117 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 A0A1B0GX30 115 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 E5RGE8 158 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 ZNF587BE7ETH6 402 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 H3BMH7 237 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 PPP1R2P9O14990 202 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 DUX1O43812 170 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 SOD3P08294 240 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 SERPINA2P20848 420 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 ELOBQ15370 118 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 KHDC3LQ587J8 217 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 PDZD11Q5EBL8 140 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 ZNF343Q6P1L6 599 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 KLHL24Q6TFL4 600 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 PRR22Q8IZ63 422 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 HIST3H2BBQ8N257 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 ZNF321PQ8N8H1 164 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 SPRY4Q9C004 299 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 PRO1933Q9H354 126 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 NSG2Q9Y328 171 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 BOD1L1Q8NFC6 3051 aa7.5□□□□□ -1.21
HPS4-206ENST00000439453 KNTC1P50748 2209 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 BTBD17A6NE02 478 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 C9orf172C9J069 976 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 TERTO14746 1132 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 CRTAPO75718 401 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 GP1BBP13224 206 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 CCL4P13236 92 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 HLA-DOBP13765 273 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 TAGLN2P37802 199 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 ACY1Q03154 408 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 OR5AS1Q8N127 324 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 FAM213BQ8TBF2 198 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 RAB39BQ96DA2 213 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 NELFAQ9H3P2 528 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 SSUH2Q9Y2M2 353 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 ELOA3CA0A087WX78 387 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 TMED7-TICAM2A0A0A6YYA0 188 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 ZNF726A6NNF4 738 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 TSTD3H0UI37 97 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 H3BQ15 152 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 GPR137BO60478 399 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 MBPP02686 304 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 CD81P60033 236 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 LSM6P62312 80 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 HSD11B2P80365 405 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 UBE2V2Q15819 145 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 CHRFAM7AQ494W8 412 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 HIKESHIQ53FT3 197 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 DNM1P34Q6PK57 102 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 SGPP2Q8IWX5 399 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 HSD17B11Q8NBQ5 300 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 HPSE2Q8WWQ2 592 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 SMDT1Q9H4I9 107 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 PHF3Q92576 2039 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 IGKV1D-43A0A0B4J1Z2 117 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 NSA2O95478 260 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 HEXBP07686 556 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 APOBEC1P41238 236 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 FBXW4P57775 412 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 NKX6-1P78426 367 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 PLXDC2Q6UX71 529 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 TMEM182Q6ZP80 229 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 SULF2Q8IWU5 870 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 OR51E1Q8TCB6 317 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 SLAMF6Q96DU3 332 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 SLC46A1Q96NT5 459 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 URM1Q9BTM9 101 aaKnown RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 FOXJ2Q9P0K8 574 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 HS3ST3B1Q9Y662 390 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 URGCP-MRPS24S4R325 110 aa7.49□□□□□ -1.21
HPS4-206ENST00000439453 RP1L1Q8IWN7 2480 aaPredicted RBP7.49□□□□□ -1.21
HPS4-206ENST00000439453 A0A087WWC5 75 aa7.48□□□□□ -1.21
HPS4-206ENST00000439453 CCDC187A0A096LP49 1063 aa7.48□□□□□ -1.21
HPS4-206ENST00000439453 TGIF2-C20orf24A0A0A6YYL0 155 aa7.48□□□□□ -1.21
HPS4-206ENST00000439453 C17orf105B2RV13 164 aa7.48□□□□□ -1.21
HPS4-206ENST00000439453 NPIPB7O75200 414 aa7.48□□□□□ -1.21
HPS4-206ENST00000439453 UBE2KP61086 200 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms