RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MOGAT3Q86VF5 341 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM58AQ8N1B3 248 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 POC1AQ8NBT0 407 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 C19orf18Q8NEA5 215 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 ERGIC1Q969X5 290 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 ZNF488Q96MN9 340 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 NEDD4LQ96PU5 975 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 CHD3Q12873 2000 aaKnown RBP14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 CTDSPLO15194 276 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 PRSS3P35030 304 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 MPPED2Q15777 294 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 TAF9Q16594 264 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 PIGYQ3MUY2 71 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 MOGAT2Q3SYC2 334 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 NKAPLQ5M9Q1 402 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 LINC00596Q86U02 117 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 OR10Z1Q8NGY1 313 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 LILRB1Q8NHL6 650 aaPredicted RBP14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 LRRC29Q8WV35 223 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 FCAMRQ8WWV6 532 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 HPS1Q92902 700 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 POM121Q96HA1 1249 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 ABHD1Q96SE0 405 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 SPOCK3Q9BQ16 436 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 UBTD1Q9HAC8 227 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 SAP30LQ9HAJ7 183 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 GLS2Q9UI32 602 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 LRRK2Q5S007 2527 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 PKDREJQ9NTG1 2253 aa14.5□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A10PA6NDY2 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A18PA6NE21 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A16PA6NEW6 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A20PA6NIJ5 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A8PA6NJQ4 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A7PA6NKC0 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 LRRC30A6NM36 301 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A22PA8MWA6 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A12PA8MX19 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A5PA8MXJ8 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A23PA8MXZ1 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 RAB27BO00194 218 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 SOCS1O15524 211 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 AKR7A2O43488 359 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 OR7C1O76099 320 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 CD55P08174 381 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ADH4P08319 380 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A15PP0C7V4 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A13PP0C7W8 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A14PP0C7W9 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM90A24PP0C7X0 464 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GLRA1P23415 457 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 PTH2RP49190 550 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 DEFA1P59665 94 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 DEFA3P59666 94 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GNG2P59768 71 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 MRPS15P82914 257 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 IKZF1Q13422 519 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 SMIM21Q3B7S5 101 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 CDNFQ49AH0 187 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 WDR82Q6UXN9 313 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ZNF826PQ6ZT77 177 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 Q6ZTK2 550 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 BIVMQ86UB2 503 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM89BQ8N5H3 189 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 AUNIPQ9H7T9 357 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 CBLN4Q9NTU7 201 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 PLEKHJ1Q9NW61 149 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ABCA4P78363 2273 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 USP9XQ93008 2570 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 A0A0A6YYD4 124 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GABARAPH6UMI1 98 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GEMIN2O14893 280 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 PTBP3O95758 552 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 HLA-DQB1P01920 261 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ACAA1P09110 424 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GSTP1P09211 210 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 IL7P13232 177 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 COX6B1P14854 86 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 HIST1H1DP16402 221 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 GATA4P43694 442 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 CCL8P80075 99 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 DGCR2P98153 550 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 SCN1BQ07699 218 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 IL13RA2Q14627 380 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 MPV17LQ2QL34 196 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 NHLRC3Q5JS37 347 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ATAD3CQ5T2N8 411 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ZNF57Q68EA5 555 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 BOLLQ8N9W6 283 aaKnown RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 Q8NFD4 153 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 SMIM4Q8WVI0 70 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 ARHGAP5-AS1Q96IT6 56 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 VRK1Q99986 396 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 NRIP2Q9BQI9 281 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 THAP7Q9BT49 309 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 PPP1R3CQ9UQK1 317 aa14.49□□□□□ -0.09
CCDC28B-202ENST00000421922 TMEM235A6NFC5 223 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 GSTZ1O43708 216 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 NOS1APO75052 506 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 CSF3P09919 207 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms