RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 WDR81Q562E7 1941 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TARM1B6A8C7 271 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 PGGT1BP53609 377 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 LINC00346Q8IVM7 164 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 USP22Q9UPT9 525 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 MELTFP08582 738 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 LSM11P83369 360 aaKnown RBP eCLIP11.58□□□□□ -0.56
COL6A3-206ENST00000409809 FAAP20Q6NZ36 180 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TCEAL8Q8IYN2 117 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 SLC25A37Q9NYZ2 338 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 CST7O76096 145 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 AVPR2P30518 371 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 RRADP55042 308 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 MYO7BQ6PIF6 2116 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 H0YGG7 62 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 ARG1P05089 322 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 LGALS4P56470 323 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 CA10Q9NS85 328 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 PIAS2O75928 621 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 FOXJ2Q9P0K8 574 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 PRSS38A1L453 326 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 IAPPP10997 89 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 THYN1Q9P016 225 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 TRPM3Q9HCF6 1732 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-206ENST00000409809 USP54Q70EL1 1684 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 SERTM1A2A2V5 107 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 HMGA2P52926 109 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 ZNF124Q15973 351 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 MAMSTRQ6ZN01 415 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 PIGTQ969N2 578 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 C3orf85A0A1B0GTC6 90 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 C19orf67A6NJJ6 358 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 M0R3E3 92 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 USP53Q70EK8 1073 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 HDGFL3Q9Y3E1 203 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 HLA-DRB1P01911 266 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 NMBP08949 121 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 PRSS56P0CW18 603 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 SDF2Q99470 211 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 MRPL37Q9BZE1 423 aaKnown RBP11.57□□□□□ -0.56
COL6A3-206ENST00000409809 P2RY12Q9H244 342 aa11.57□□□□□ -0.56
COL6A3-206ENST00000409809 TRAV9-1A0A075B6T8 112 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 ZNF250P15622 560 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 MRGPRX4Q96LA9 322 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 GUCD1Q96NT3 240 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 C16orf70Q9BSU1 422 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 ASB1Q9Y576 335 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 RBBP6Q7Z6E9 1792 aaKnown RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 TCRBV16S1A1N1A0A5B0 115 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 DRD1P21728 446 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 GDF1P27539 372 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 FUT7Q11130 342 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 RAB32Q13637 225 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 NEUROG1Q92886 237 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 ZG16BQ96DA0 208 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 PITX1P78337 314 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 OPN3Q9H1Y3 402 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 LINC00597Q9H2U6 94 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 RCC2Q9P258 522 aaKnown RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 FGF18O76093 207 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 MYOGP15173 224 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 TIAL1Q01085 375 aaKnown RBP eCLIP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 RBPJQ06330 500 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 OR8B3Q8NGG8 313 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 ZNF355PQ9NSJ1 428 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 CD1AP06126 327 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 CST9Q5W186 159 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 OR5A1Q8NGJ0 315 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 TMEM272A0A1B0GTI8 110 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 TLCD2A6NGC4 264 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 SDCBPO00560 298 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 GJB5O95377 273 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 SLC2A10O95528 541 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 BCDIN3DQ7Z5W3 292 aaKnown RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 ADAM20O43506 726 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 SLC25A5P05141 298 aaKnown RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 CCR5P51681 352 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 LCN2P80188 198 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 RELBQ01201 579 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 MEF2BQ02080 365 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-206ENST00000409809 HES3Q5TGS1 186 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 OR51E1Q8TCB6 317 aa11.56□□□□□ -0.56
COL6A3-206ENST00000409809 BTAF1O14981 1849 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 HPXP02790 462 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 SEMG1P04279 462 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 GLCCI1Q86VQ1 547 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 LURAP1LQ8IV03 231 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 TTC9BQ8N6N2 239 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 OR4C12Q96R67 309 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 GSN-AS1Q9NRJ2 163 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 COA3Q9Y2R0 106 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-206ENST00000409809 PLPP1O14494 284 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 HS3ST1O14792 307 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 LINC00614P0C842 121 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 ZBTB34Q8NCN2 500 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 TIMD4Q96H15 378 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 GNB4Q9HAV0 340 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 GPR37O15354 613 aa11.55□□□□□ -0.56
COL6A3-206ENST00000409809 LANCL1O43813 399 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms