RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CMTM3Q96MX0 182 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 CHODLQ9H9P2 273 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 KCNIP1Q9NZI2 227 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 CD300LBA8K4G0 201 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 MSTNO14793 375 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 SMAD7O15105 426 aaKnown RBP8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ARHGDIBP52566 201 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 B2MP61769 119 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 CDK5R1Q15078 307 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ZNF826PQ6ZT77 177 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 ZDHHC23Q8IYP9 409 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 RELL2Q8NC24 303 aaPredicted RBP8.96□□□□□ -0.97
COL6A3-205ENST00000392004 TMEM171Q8WVE6 324 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 METTL9Q9H1A3 318 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 SLC25A32Q9H2D1 315 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 PPP1R3CQ9UQK1 317 aa8.96□□□□□ -0.97
COL6A3-205ENST00000392004 UBBP0CG47 229 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 S100GP29377 79 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 CDKN1AP38936 164 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 RPS27AP62979 156 aaKnown RBP8.96□□□□□ -0.98
COL6A3-205ENST00000392004 UBA52P62987 128 aaKnown RBP8.96□□□□□ -0.98
COL6A3-205ENST00000392004 SORDQ00796 357 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 P2RY6Q15077 328 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 MOGAT3Q86VF5 341 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 FAM185AQ8N0U4 392 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 OR52B4Q8NGK2 314 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 HAVCR2Q8TDQ0 301 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 RNF128Q8TEB7 428 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 RAB40AQ8WXH6 277 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 C12orf57Q99622 126 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 RTL8AQ9BWD3 113 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 RAB27BO00194 218 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 GPRIN2O60269 458 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 MRPS34P82930 218 aaKnown RBP8.96□□□□□ -0.98
COL6A3-205ENST00000392004 LIN54Q6MZP7 749 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 SPAG16Q8N0X2 631 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 C17orf78Q8N4C9 275 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 OR51A2Q8NGJ7 313 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 SAP30LQ9HAJ7 183 aa8.96□□□□□ -0.98
COL6A3-205ENST00000392004 IGHV3OR15-7A0A075B7D8 119 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 G3V3Q6 166 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 J3QRE1 110 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 NDUFB6O95139 128 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PVALBP20472 110 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-205ENST00000392004 IGHV1-2P23083 117 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 DCTDP32321 178 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF85Q03923 595 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 RBMS2Q15434 407 aaKnown RBP8.95□□□□□ -0.98
COL6A3-205ENST00000392004 SMIM19Q96E16 107 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PLXNB3Q9ULL4 1909 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 A0A0G2JNJ9 132 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR2A4O95047 310 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR4A8P0C604 315 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 SLC25A1P53007 311 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 FGL1Q08830 312 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PCGF3Q3KNV8 242 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 KCTD9Q7L273 389 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 GGNQ86UU5 652 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PPP1R35Q8TAP8 253 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PGLYRP3Q96LB9 341 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR2A7Q96R45 310 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 KCNK17Q96T54 332 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 MRI1Q9BV20 369 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PROK2Q9HC23 129 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 C1orf123Q9NWV4 160 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 Q9UFV3 132 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR5H1A6NKK0 313 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 IFITM5A6NNB3 132 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 DEGS1O15121 323 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PRDX4Q13162 271 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 HFEQ30201 348 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 ATRAIDQ6UW56 229 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 DRAM2Q6UX65 266 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 Q6ZT83 130 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR1M1Q8NGA1 313 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OR1S1Q8NH92 325 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 PHYHIPQ92561 330 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 MRPS24Q96EL2 167 aaKnown RBP8.95□□□□□ -0.98
COL6A3-205ENST00000392004 CMSS1Q9BQ75 279 aaKnown RBP8.95□□□□□ -0.98
COL6A3-205ENST00000392004 BIN3Q9NQY0 253 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 MRPL22Q9NWU5 206 aaKnown RBP8.95□□□□□ -0.98
COL6A3-205ENST00000392004 OPN4Q9UHM6 478 aa8.95□□□□□ -0.98
COL6A3-205ENST00000392004 ANKRD20A5PA0PJZ0 165 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 LYNX1G3V0Z9 82 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 LY6HO94772 140 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 LYNX1P0DP58 116 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 BSPH1Q075Z2 132 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 OLFML2AQ68BL7 652 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 SLC25A24Q6NUK1 477 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 OR2AK2Q8NG84 335 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 OR13G1Q8NGZ3 307 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 SFXN3Q9BWM7 321 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF471Q9BX82 626 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 TAS2R8Q9NYW2 309 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 FAM74A7A6NL05 159 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 TMPRSS2O15393 492 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 XRCC2O43543 280 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ENSAO43768 121 aaKnown RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 LMX1BO60663 402 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF254O75437 659 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms