RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 A0A0A6YYJ9 748 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 SIGLEC5O15389 551 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 NDUFB3O43676 98 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 ECDO95905 644 aaPredicted RBP13.07□□□□□ -0.32
CLN3-201ENST00000333496 PLATP00750 562 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 LIPFP07098 398 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 SFTPBP07988 381 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 C21orf33P30042 268 aaPredicted RBP13.07□□□□□ -0.32
CLN3-201ENST00000333496 MAP2K4P45985 399 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 GABRA2P47869 451 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 FUT6P51993 359 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 ERVK11-1P61568 191 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 IL24Q13007 206 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 SPCS2Q15005 226 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 OR2G6Q5TZ20 316 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 USP43Q70EL4 1123 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 UTS2BQ765I0 119 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 ZNF676Q8N7Q3 588 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 PNLDC1Q8NA58 520 aaKnown RBP13.07□□□□□ -0.32
CLN3-201ENST00000333496 ZNRF1Q8ND25 227 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 LY6G5BQ8NDX9 201 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 S100ZQ8WXG8 99 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 NRIP2Q9BQI9 281 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 PKIBQ9C010 78 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 HES4Q9HCC6 221 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 RASL12Q9NYN1 266 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 DIMT1Q9UNQ2 313 aaKnown RBP13.07□□□□□ -0.32
CLN3-201ENST00000333496 POLDIP2Q9Y2S7 368 aa13.07□□□□□ -0.32
CLN3-201ENST00000333496 CAB39Q9Y376 341 aaPredicted RBP13.07□□□□□ -0.32
CLN3-201ENST00000333496 hCG_2014768A0A024R1R8 64 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 TRAV40A0A0B4J280 105 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ZNF879B4DU55 563 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 F8VVB4 439 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 F8VWA3 439 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 SERPINA3P01011 423 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 RANBP1P43487 201 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 BMXP51813 675 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 GBX2P52951 348 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 IL13RA1P78552 427 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 MRPL28Q13084 256 aaKnown RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 LRRC10Q5BKY1 277 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 BPIFB2Q8N4F0 458 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 OR13C3Q8NGS6 347 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ZNF418Q8TF45 676 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 BORCS8Q96FH0 119 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 MED30Q96HR3 178 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 TBX15Q96SF7 602 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 DCTN5Q9BTE1 182 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 SIRPDQ9H106 197 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ACOT13Q9NPJ3 140 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 MTCH1Q9NZJ7 389 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 CLEC2DQ9UHP7 191 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 SOX21Q9Y651 276 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 NKX6-3A6NJ46 265 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 RFPL4AA6NLU0 287 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 TMEM212A6NML5 194 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 RFPL4AL1F8VTS6 287 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 GPR37O15354 613 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ATF1P18846 271 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 FPR2P25090 351 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 HILS1P60008 231 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ARF6P62330 175 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 CNN3Q15417 329 aaKnown RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 TBCEQ15813 527 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 SMIM21Q3B7S5 101 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 UBE2UQ5VVX9 321 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 RNF144BQ7Z419 303 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ZNF554Q86TJ5 538 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 CD177Q8N6Q3 437 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 DNAAF1Q8NEP3 725 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 OR5AK2Q8NH90 309 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 RPS4Y2Q8TD47 263 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 SDSLQ96GA7 329 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ZNF48Q96MX3 618 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 WDFY2Q96P53 400 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 PCGF1Q9BSM1 259 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 CDCA4Q9BXL8 241 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 ESM1Q9NQ30 184 aa13.06□□□□□ -0.32
CLN3-201ENST00000333496 SLC25A10Q9UBX3 287 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 SIRT4Q9Y6E7 314 aaPredicted RBP13.06□□□□□ -0.32
CLN3-201ENST00000333496 TRBV2A0A0J9YWF9 115 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 IRGMA1A4Y4 181 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 TOX4O94842 621 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 NXPH2O95156 264 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 LALBAP00709 142 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 ZNF20P17024 532 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 AZGP1P25311 298 aaKnown RBP13.05□□□□□ -0.32
CLN3-201ENST00000333496 PSMB9P28065 219 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 CEBPDP49716 269 aaPredicted RBP13.05□□□□□ -0.32
CLN3-201ENST00000333496 RBP2P50120 134 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 CAV3P56539 151 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 IRF3Q14653 427 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 CRIP3Q6Q6R5 217 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 SPATA3Q8NHX4 192 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 C8orf46Q8TAG6 207 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 CHPT1Q8WUD6 406 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 RGP1Q92546 391 aaPredicted RBP13.05□□□□□ -0.32
CLN3-201ENST00000333496 TMEM80Q96HE8 168 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 C19orf24Q9BVV8 132 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 SUCNR1Q9BXA5 334 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms