RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 HLA-DRB3P79483 266 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 DPPA3Q6W0C5 159 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 SIGIRRQ6IA17 410 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 PTX4Q96A99 478 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 NRG2O14511 850 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 LAMA4Q16363 1823 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 SNAI1O95863 264 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 CA3P07451 260 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 ALKBH6Q3KRA9 238 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 IGSF11Q5DX21 431 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 GBGT1Q8N5D6 347 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 SFRP2Q96HF1 295 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 AQP10Q96PS8 301 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 OR2W1Q9Y3N9 320 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 ID4P47928 161 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 PLAURQ03405 335 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 GLDNQ6ZMI3 551 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 LGALS3P17931 250 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 ABHD17CQ6PCB6 329 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 GSG1Q2KHT4 349 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 FAM219AQ8IW50 185 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 OR8I2Q8N0Y5 310 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 SMIM4Q8WVI0 70 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 RAB29O14966 203 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 EPXP11678 715 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 FUT7Q11130 342 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 BSXQ3C1V8 233 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 LIAT1Q6ZQX7 453 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF383Q8NA42 475 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 OR13G1Q8NGZ3 307 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 RER1O15258 196 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 CSNK1EP49674 416 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 RPL18Q07020 188 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 C3orf85A0A1B0GTC6 90 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 SNX22Q96L94 193 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 F2RL2O00254 374 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 CBR3O75828 277 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 CXorf1O96002 111 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 INHBBP09529 407 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 SMUG1Q53HV7 270 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 VN1R17PQ8TDU5 208 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 PARM1Q6UWI2 310 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 LRRC3BQ96PB8 259 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 PRSS50Q9UI38 385 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 NUP188Q5SRE5 1749 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 IGHV3-64DA0A0J9YX35 117 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 NOXO1Q8NFA2 376 aa12.5□□□□□ -0.41
CCDC88A-201ENST00000263630 BCDIN3DQ7Z5W3 292 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 HINT3Q9NQE9 182 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 CACNG5Q9UF02 275 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 AHCTF1Q8WYP5 2266 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 NWD2Q9ULI1 1742 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 FAM181BA6NEQ2 426 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 NGFP01138 241 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 SLURP2P0DP57 97 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 PNLIPRP2P54317 469 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 A4GNTQ9UNA3 340 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 PHLPP1O60346 1717 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF77Q15935 545 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 CTF1Q16619 201 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 PSMG3Q9BT73 122 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 RSRP1Q9BUV0 290 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 VAX2Q9UIW0 290 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 DIRC3C9JPN6 131 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 IL24Q13007 206 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 KCNMB1Q16558 191 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 CA5BP1Q8WTZ4 195 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 OIT3Q8WWZ8 545 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 B3GALT4O96024 378 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 CDK5R1Q15078 307 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 SPACA5Q96QH8 159 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 HCFC1R1Q9NWW0 138 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 SIRT5Q9NXA8 310 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 DSCR4P56555 118 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 OR1F12Q8NHA8 337 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 WTIPA6NIX2 430 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC16A11Q8NCK7 471 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF740Q8NDX6 193 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 SDF2Q99470 211 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 HOXC4P09017 264 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 TMEM108Q6UXF1 575 aa12.49□□□□□ -0.41
CCDC88A-201ENST00000263630 MVB12AQ96EY5 273 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 HS3ST2Q9Y278 367 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 GPX5O75715 221 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 ASCL1P50553 236 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 TMEM211Q6ICI0 200 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 TAS1R1Q7RTX1 841 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 OR10V1Q8NGI7 309 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 FBXO17Q96EF6 278 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 FAAP20Q6NZ36 180 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC25A42Q86VD7 318 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 C20orf196Q8IYI0 205 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 LINC00052Q96N35 136 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 NUP98P52948 1817 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 CCR2P41597 374 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 RBM45Q8IUH3 476 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 OR4D9Q8NGE8 314 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 OR4C3Q8NH37 302 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 LMO3Q8TAP4 145 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 FUCA1P04066 466 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms