RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RNF212BA8MTL3 300 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 NDUFB3O43676 98 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 ALX3O95076 343 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 SERPINA3P01011 423 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 TFF1P04155 84 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 ATF1P18846 271 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 GBX2P52951 348 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-213ENST00000598355 SRSF2Q01130 221 aaKnown RBP13.32□□□□□ -0.28
TRIM28-213ENST00000598355 LRRC10Q5BKY1 277 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 OR2G6Q5TZ20 316 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 ANGPTL5Q86XS5 388 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 KIR3DL3Q8N743 410 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF676Q8N7Q3 588 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 SPATA3Q8NHX4 192 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 NPRL2Q8WTW4 380 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 GGHQ92820 318 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 FGGYQ96C11 551 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 BORCS8Q96FH0 119 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 WDFY2Q96P53 400 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 TBX15Q96SF7 602 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 PDCD1LG2Q9BQ51 273 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 SUCNR1Q9BXA5 334 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 FKBP14Q9NWM8 211 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 MTCH1Q9NZJ7 389 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 KPTNQ9Y664 436 aa13.32□□□□□ -0.28
TRIM28-213ENST00000598355 FAM230AA0A1W2PPH8 454 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 LALBAP00709 142 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 KNG1P01042 644 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 SFTPBP07988 381 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF20P17024 532 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 AZGP1P25311 298 aaKnown RBP13.31□□□□□ -0.28
TRIM28-213ENST00000598355 RBP2P50120 134 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 GTF2A1P52655 376 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-213ENST00000598355 AQP4P55087 323 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 IKZF1Q13422 519 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF529Q6P280 563 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 LHFPL2Q6ZUX7 228 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 CD177Q8N6Q3 437 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 OR13C3Q8NGS6 347 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 OR5AK2Q8NH90 309 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 TMEM80Q96HE8 168 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 COMMD4Q9H0A8 199 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 OCEL1Q9H607 264 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 SEBOXQ9HB31 216 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-213ENST00000598355 SLC25A10Q9UBX3 287 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-213ENST00000598355 PSORS1C1Q9UIG5 152 aa13.31□□□□□ -0.28
TRIM28-213ENST00000598355 EFCAB10A6NFE3 127 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 RFPL4AA6NLU0 287 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 RFPL4AL1F8VTS6 287 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 OGG1O15527 345 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 XPNPEP2O43895 674 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 NXPH2O95156 264 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 MYL12AP19105 171 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 PRKACBP22694 351 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 FPR2P25090 351 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 BPIFB3P59826 476 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ST3GAL4Q11206 333 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ASPHD2Q6ICH7 369 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 RPL22L1Q6P5R6 122 aaKnown RBP13.3□□□□□ -0.28
TRIM28-213ENST00000598355 METAP1DQ6UB28 335 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-213ENST00000598355 TMPRSS11AQ6ZMR5 421 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 BPIFB2Q8N4F0 458 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF561Q8N587 486 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ZNRF1Q8ND25 227 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 SMIM19Q96E16 107 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 CEP19Q96LK0 163 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF48Q96MX3 618 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-213ENST00000598355 OPALINQ96PE5 141 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 PRDM13Q9H4Q3 707 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 ESM1Q9NQ30 184 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 CLEC2DQ9UHP7 191 aa13.3□□□□□ -0.28
TRIM28-213ENST00000598355 SIRT4Q9Y6E7 314 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-213ENST00000598355 TRBV23-1A0A0A0MS06 115 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 TRBV2A0A0J9YWF9 115 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 F8VVB4 439 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 F8VWA3 439 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 TOX4O94842 621 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 ATP1B3P54709 279 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 METTL11BQ5VVY1 283 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 DMKNQ6E0U4 476 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-213ENST00000598355 SLC25A26Q70HW3 274 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 Q8IYB0 196 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 BCL6BQ8N143 479 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-213ENST00000598355 ZDHHC22Q8N966 263 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 OR13C9Q8NGT0 318 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 C22orf15Q8WYQ4 148 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 C19orf24Q9BVV8 132 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 ZCCHC4Q9H5U6 513 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 CNTD2Q9H8S5 307 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 UNKLQ9H9P5 680 aaKnown RBP13.29□□□□□ -0.28
TRIM28-213ENST00000598355 BABAM2Q9NXR7 383 aa13.29□□□□□ -0.28
TRIM28-213ENST00000598355 SULT1B1O43704 296 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 PRDX2P32119 198 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 GABRA2P47869 451 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 CEBPDP49716 269 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-213ENST00000598355 MED21Q13503 144 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 DOC2BQ14184 412 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 PDCD1Q15116 288 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 SERPINA12Q8IW75 414 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 Q8N7P7 452 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms