RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ZNRF1Q8ND25 227 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 LY6G5BQ8NDX9 201 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 SPATA3Q8NHX4 192 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 H1FXQ92522 213 aaKnown RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 BORCS8Q96FH0 119 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 MED30Q96HR3 178 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 ZNF48Q96MX3 618 aaPredicted RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 WDFY2Q96P53 400 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 DCTN5Q9BTE1 182 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 HES4Q9HCC6 221 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 ESM1Q9NQ30 184 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 DIMT1Q9UNQ2 313 aaKnown RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 HSPE1-MOB4S4R3N1 261 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 IRGMA1A4Y4 181 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 RFPL4AA6NLU0 287 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 TMEM212A6NML5 194 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 RFPL4AL1F8VTS6 287 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 F8VVB4 439 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 F8VWA3 439 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 TOX4O94842 621 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 INMTO95050 263 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 NDUFB7P17568 137 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 AZGP1P25311 298 aaKnown RBP12.96□□□□□ -0.33
LIG3-215ENST00000592690 ERVK11-1P61568 191 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 METTL11BQ5VVY1 283 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 BRD3OSQ6XYD6 125 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 UTS2BQ765I0 119 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.96□□□□□ -0.33
LIG3-215ENST00000592690 TMEM185AQ8NFB2 350 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 OR5AK2Q8NH90 309 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 RGP1Q92546 391 aaPredicted RBP12.96□□□□□ -0.33
LIG3-215ENST00000592690 GGHQ92820 318 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 SLAMF9Q96A28 289 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 SDSLQ96GA7 329 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 MS4A7Q9GZW8 240 aaPredicted RBP12.96□□□□□ -0.33
LIG3-215ENST00000592690 VCXQ9H320 206 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 MTCH1Q9NZJ7 389 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 CLEC2DQ9UHP7 191 aa12.96□□□□□ -0.33
LIG3-215ENST00000592690 CAB39Q9Y376 341 aaPredicted RBP12.96□□□□□ -0.33
LIG3-215ENST00000592690 TRBV2A0A0J9YWF9 115 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 GPR37O15354 613 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 XPNPEP2O43895 674 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 CCDC159P0C7I6 412 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 CAV3P56539 151 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 RUSC1-AS1Q66K80 236 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 C9orf139Q6ZV77 190 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 SLC25A26Q70HW3 274 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 RNF144BQ7Z419 303 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 ZDHHC22Q8N966 263 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 DNAAF1Q8NEP3 725 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 OR13C9Q8NGT0 318 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 C8orf46Q8TAG6 207 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 FBLIM1Q8WUP2 373 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 TFAP2CQ92754 450 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 COMMD4Q9H0A8 199 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 CNTD2Q9H8S5 307 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 ONECUT1Q9UBC0 465 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 OR14J1Q9UGF5 321 aa12.95□□□□□ -0.34
LIG3-215ENST00000592690 MDFIC2A0A1B0GVS7 189 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 LALBAP00709 142 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 MYL12AP19105 171 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 PRDX2P32119 198 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 POU3F4P49335 361 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 RBP2P50120 134 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 ATP1B3P54709 279 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 AQP4P55087 323 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 ST3GAL4Q11206 333 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 CDK5R1Q15078 307 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 GPR157Q5UAW9 335 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 RPS4Y2Q8TD47 263 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 TSEN15Q8WW01 171 aaKnown RBP12.94□□□□□ -0.34
LIG3-215ENST00000592690 RFT1Q96AA3 541 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 SPSB1Q96BD6 273 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 TMEM80Q96HE8 168 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 CEP19Q96LK0 163 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 OPALINQ96PE5 141 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 SPACA5Q96QH8 159 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 JMJD8Q96S16 334 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 EXOSC1Q9Y3B2 195 aaKnown RBP12.94□□□□□ -0.34
LIG3-215ENST00000592690 KPTNQ9Y664 436 aa12.94□□□□□ -0.34
LIG3-215ENST00000592690 SIRT4Q9Y6E7 314 aaPredicted RBP12.94□□□□□ -0.34
LIG3-215ENST00000592690 CENPVL3A0A0U1RRI6 287 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 SPRY1O43609 319 aaPredicted RBP12.93□□□□□ -0.34
LIG3-215ENST00000592690 PIPP12273 146 aaPredicted RBP12.93□□□□□ -0.34
LIG3-215ENST00000592690 PRKACBP22694 351 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 CAPZA1P52907 286 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 DLX1P56177 255 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 MTCP1P56278 107 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 PRB3Q04118 309 aaPredicted RBP12.93□□□□□ -0.34
LIG3-215ENST00000592690 CCDC58Q4VC31 144 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 RPL22L1Q6P5R6 122 aaKnown RBP12.93□□□□□ -0.34
LIG3-215ENST00000592690 CRIP3Q6Q6R5 217 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 TMPRSS11AQ6ZMR5 421 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 LHFPL2Q6ZUX7 228 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 AHSA2Q719I0 299 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 VMO1Q7Z5L0 202 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 HAVCR2Q8TDQ0 301 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 GATAD2BQ8WXI9 593 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 LHX4Q969G2 390 aa12.93□□□□□ -0.34
LIG3-215ENST00000592690 C1orf147Q96MC9 270 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms