RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SLITRK2Q9H156 845 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 WDR13Q9H1Z4 485 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 SMURF1Q9HCE7 757 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 GNG8Q9UK08 70 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 HHLA2Q9UM44 414 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 SF3B6Q9Y3B4 125 aaKnown RBP8.65□□□□□ -1.02
LIG3-212ENST00000590181 PCDHGB5Q9Y5G0 923 aa8.65□□□□□ -1.02
LIG3-212ENST00000590181 IGKV1D-17A0A075B6S4 117 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 IGHV3OR15-7A0A075B7D8 119 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 FUOMA2VDF0 154 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 PRR32B1ATL7 298 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 H3BUI4 141 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 NDUFA7O95182 113 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 HTR1AP08908 422 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 CCDC159P0C7I6 412 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 NDUFB7P17568 137 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 DCKP27707 260 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 GABRA2P47869 451 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 ZNF85Q03923 595 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 IKZF1Q13422 519 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 IL18R1Q13478 541 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 GDPGP1Q6ZNW5 385 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 LHFPL2Q6ZUX7 228 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 VMO1Q7Z5L0 202 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 SAXO1Q8IYX7 474 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 OR5D14Q8NGL3 314 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 OR4F5Q8NH21 305 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 OR5R1Q8NH85 324 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 PPP1R35Q8TAP8 253 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 MBOAT4Q96T53 435 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 RASSF4Q9H2L5 321 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 BEX1Q9HBH7 125 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 FAM118AQ9NWS6 357 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 SMPD3Q9NY59 655 aaPredicted RBP8.64□□□□□ -1.03
LIG3-212ENST00000590181 ONECUT1Q9UBC0 465 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 ZNF222Q9UK12 451 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 HSPE1-MOB4S4R3N1 261 aa8.64□□□□□ -1.03
LIG3-212ENST00000590181 LOC107986453A0A1B0GWG9 222 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 A0A1W2PQ09 198 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 RFPL4AA6NLU0 287 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 TMEM212A6NML5 194 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 RFPL4AL1F8VTS6 287 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 M0R129 80 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 RHBDL1O75783 438 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 IGHA1P01876 353 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 OCM2P0CE71 109 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 OCMP0CE72 109 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 ZNF20P17024 532 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 GABRB1P18505 474 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 AMY2BP19961 511 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 GBX2P52951 348 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 RPL31P62899 125 aaKnown RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 MEF2CQ06413 473 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 DEFB112Q30KQ8 113 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 SPIN3Q5JUX0 258 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 SSX6Q7RTT6 188 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 SERPINA12Q8IW75 414 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 BCL6BQ8N143 479 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 FAM216BQ8N7L0 139 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 ZSCAN4Q8NAM6 433 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 SETD9Q8NE22 299 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 OR5T2Q8NGG2 359 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 H1FXQ92522 213 aaKnown RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 LHX4Q969G2 390 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 CEP19Q96LK0 163 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 ZNF48Q96MX3 618 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 DUX5Q96PT3 197 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 TBX5Q99593 518 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 CDCA4Q9BXL8 241 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 FGF23Q9GZV9 251 aaPredicted RBP8.63□□□□□ -1.03
LIG3-212ENST00000590181 COMMD4Q9H0A8 199 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 MAB21L2Q9Y586 359 aa8.63□□□□□ -1.03
LIG3-212ENST00000590181 H0YAE9 185 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 K7N7A8 449 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 HOXA3O43365 443 aaPredicted RBP8.62□□□□□ -1.03
LIG3-212ENST00000590181 PAHP00439 452 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 TK1P04183 234 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 SFTPBP07988 381 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 DBTP11182 482 aaKnown RBP8.62□□□□□ -1.03
LIG3-212ENST00000590181 IER3P46695 156 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 CAPZA1P52907 286 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 ALKBH1Q13686 389 aaKnown RBP8.62□□□□□ -1.03
LIG3-212ENST00000590181 UBE2V2Q15819 145 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 DGUOKQ16854 277 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 C11orf88Q6PI97 169 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 BRD3OSQ6XYD6 125 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 TMPRSS11AQ6ZMR5 421 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 LIAT1Q6ZQX7 453 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 PRSS35Q8N3Z0 413 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 ZNRF1Q8ND25 227 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 TMEM185AQ8NFB2 350 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 PPP1R14AQ96A00 147 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 LGALS12Q96DT0 336 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 SNX22Q96L94 193 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 PPP1R3EQ9H7J1 279 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 RAB18Q9NP72 206 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 FGF20Q9NP95 211 aaPredicted RBP8.62□□□□□ -1.03
LIG3-212ENST00000590181 PCDHB16Q9NRJ7 776 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 GPR173Q9NS66 373 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 SNTG1Q9NSN8 517 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms