RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LINC01555Q8NAE3 123 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZSCAN4Q8NAM6 433 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 SLC16A11Q8NCK7 471 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NAXEQ8NCW5 288 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NPEPL1Q8NDH3 523 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LFNGQ8NES3 379 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR8G5Q8NG78 346 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR4E2Q8NGC2 313 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR51D1Q8NGF3 324 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR56B1Q8NGI3 324 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR1J1Q8NGS3 322 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR6K6Q8NGW6 343 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR2G2Q8NGZ5 317 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR51A7Q8NH64 312 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LYPD6BQ8NI32 183 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NT5CQ8TCD5 201 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 TSEN15Q8WW01 171 aaKnown RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 TMED6Q8WW62 240 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LIPHQ8WWY8 451 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LCN9Q8WX39 176 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ASB17Q8WXJ9 295 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 AQP3Q92482 292 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 TMEM106AQ96A25 262 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 FAM3DQ96BQ1 224 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZG16BQ96DA0 208 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 RAB3CQ96E17 227 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 SEH1LQ96EE3 360 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 KIRREL1Q96J84 757 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 WWC2-AS2Q96NR7 200 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PFDN5Q99471 154 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 S100A13Q99584 98 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 MICU1Q9BPX6 476 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 TIMM29Q9BSF4 260 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ALG12Q9BV10 488 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 TOLLIPQ9H0E2 274 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ATG5Q9H1Y0 275 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 WDR76Q9H967 626 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 WDR54Q9H977 334 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 GFOD1Q9NXC2 390 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 DCAF16Q9NXF7 216 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 FLRT3Q9NZU0 649 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 CKLFQ9UBR5 152 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 MRM2Q9UI43 246 aaKnown RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZNF230Q9UIE0 474 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 ANAPC10Q9UM13 185 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 C19orf53Q9UNZ5 99 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 HIF3AQ9Y2N7 669 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 SLC22A7Q9Y694 548 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 SPTBP11277 2137 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 FREM1Q5H8C1 2179 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 SCN3AQ9NY46 2000 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 DYNC2H1Q8NCM8 4307 aaKnown RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 TRBV23-1A0A0A0MS06 115 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 IGHV1-45A0A0A0MS14 117 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 A0A0G2JN53 185 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 A0A1B0GW64 132 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 A0A1W2PPH5 198 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 A0A1W2PS29 197 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 MEGF11A6BM72 1044 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 GLOD5A6NK44 160 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 DEFB108AA8MXU0 73 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 TSTD3H0UI37 97 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 KLRC4-KLRK1H3BQV0 150 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 M0QYG6 137 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 SLC31A2O15432 143 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 TXNL1O43396 289 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 TGOLN2O43493 480 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 MED6O75586 246 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 NKX2-2O95096 273 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 RENP00797 406 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 CST4P01036 141 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 CSTBP04080 98 aaKnown RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 MAS1P04201 325 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 NGFRP08138 427 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 FCGR3AP08637 254 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 ITGA5P08648 1049 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 SLC35G6P0C7Q6 338 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 C8orf89P0DMQ9 161 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 IGHV4-31P0DP07 118 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 SELLP14151 372 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 CBR1P16152 277 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 IGFBP3P17936 291 aaPredicted RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 CXCR1P25024 350 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 ACKR3P25106 362 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 HTR2CP28335 458 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 LAP3P28838 519 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 S100A2P29034 98 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 CMPK1P30085 196 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 RPL4P36578 427 aaKnown RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 SERPINF1P36955 418 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 GPX4P36969 197 aaPredicted RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 CDKN1AP38936 164 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 ECI1P42126 302 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 KIR3DL2P43630 455 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 LPAR6P43657 344 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 OR1D4P47884 311 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 CDX1P47902 265 aaPredicted RBP3.61□□□□□ -1.83
LIG3-211ENST00000588713 SOX2P48431 317 aa3.61□□□□□ -1.83
LIG3-211ENST00000588713 RBP2P50120 134 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms