RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DEFB112Q30KQ8 113 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 TTC23Q5W5X9 447 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 VMO1Q7Z5L0 202 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 LHFPL3Q86UP9 236 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 ZNRF1Q8ND25 227 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 TRMT10AQ8TBZ6 339 aaKnown RBP12.22□□□□□ -0.45
SS18-212ENST00000579061 APH1BQ8WW43 257 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 LHX4Q969G2 390 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 SLC25A28Q96A46 364 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 BORCS8Q96FH0 119 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 ZNF488Q96MN9 340 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 JAM3Q9BX67 310 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 AMBNQ9NP70 447 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 ONECUT1Q9UBC0 465 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 SLC1A7O00341 560 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 WBP4O75554 376 aaKnown RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 KNG1P01042 644 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 TFF1P04155 84 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 HKR1P10072 659 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 PRKACBP22694 351 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 PRDX2P32119 198 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 RBP2P50120 134 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 ATP1B3P54709 279 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 GUCA2AQ02747 115 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 SLC9A3R2Q15599 337 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 ZNF691Q5VV52 312 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 ANGPTL5Q86XS5 388 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 TMEM86BQ8N661 226 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 CD177Q8N6Q3 437 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 TMEM185AQ8NFB2 350 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 OR52I1Q8NGK6 324 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 NPRL2Q8WTW4 380 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 ZDHHC16Q969W1 377 aa12.21□□□□□ -0.45
SS18-212ENST00000579061 ADAT3Q96EY9 351 aaPredicted RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 UNKLQ9H9P5 680 aaKnown RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 SEBOXQ9HB31 216 aaPredicted RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 FGF20Q9NP95 211 aaPredicted RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 SOX21Q9Y651 276 aaPredicted RBP12.21□□□□□ -0.45
SS18-212ENST00000579061 DSCAML1Q8TD84 2053 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 IGKV1-27A0A075B6S5 117 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 IRGMA1A4Y4 181 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 ZNF20P17024 532 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 ATF1P18846 271 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 DCKP27707 260 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 GBX2P52951 348 aaPredicted RBP12.2□□□□□ -0.46
SS18-212ENST00000579061 BLMHQ13867 455 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 RCN1Q15293 331 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 RUSC1-AS1Q66K80 236 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 Q6YL49 198 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 LHFPL2Q6ZUX7 228 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 Q8IYB0 196 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 Q8N7P7 452 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 ZNF676Q8N7Q3 588 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 SETD9Q8NE22 299 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 SPSB1Q96BD6 273 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 FGGYQ96C11 551 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 CEP19Q96LK0 163 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 DUX5Q96PT3 197 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 FAM234AQ9H0X4 552 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 ISG20L2Q9H9L3 353 aaKnown RBP12.2□□□□□ -0.46
SS18-212ENST00000579061 MTCH1Q9NZJ7 389 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 TENM1Q9UKZ4 2725 aa12.2□□□□□ -0.46
SS18-212ENST00000579061 IGKV1-9A0A0C4DH69 117 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 MDFIC2A0A1B0GVS7 189 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 A0A1W2PQ09 198 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 TMEM212A6NML5 194 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 CASQ2O14958 399 aaPredicted RBP12.19□□□□□ -0.46
SS18-212ENST00000579061 MT-ND2P03891 347 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 CCDC159P0C7I6 412 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 AZGP1P25311 298 aaKnown RBP12.19□□□□□ -0.46
SS18-212ENST00000579061 PEX2P28328 305 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 CAPZA1P52907 286 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 FOXL1Q12952 345 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 IL18R1Q13478 541 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 LRRC36Q1X8D7 754 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 NCR3LG1Q68D85 454 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 C16orf87Q6PH81 154 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 MKXQ8IYA7 352 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 DHRSXQ8N5I4 330 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 OR13C3Q8NGS6 347 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 TBC1D15Q8TC07 691 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 COMMD4Q9H0A8 199 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 METTL8Q9H825 291 aaKnown RBP12.19□□□□□ -0.46
SS18-212ENST00000579061 NEK6Q9HC98 313 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 POMT1Q9Y6A1 747 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 HSPE1-MOB4S4R3N1 261 aa12.19□□□□□ -0.46
SS18-212ENST00000579061 A0A1W2PPH5 198 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 HOXA3O43365 443 aaPredicted RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 ALX3O95076 343 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 CYB5AP00167 134 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 CHRM2P08172 466 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 LIMS3P0CW19 117 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 LIMS4P0CW20 117 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 EEF1B2P24534 225 aaKnown RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 MTCP1P56278 107 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 ADARB1P78563 741 aaKnown RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 SMN1Q16637 294 aaKnown RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 AWAT1Q58HT5 328 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 SLC25A26Q70HW3 274 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 OR51A4Q8NGJ6 313 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms