RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 PRDX2P32119 198 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 MRPL28Q13084 256 aaKnown RBP16.6■□□□□ 0.25
NUP88-204ENST00000572290 SMN1Q16637 294 aaKnown RBP16.6■□□□□ 0.25
NUP88-204ENST00000572290 RUSC1-AS1Q66K80 236 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 KIR3DL3Q8N743 410 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 GATAD2BQ8WXI9 593 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 DUX5Q96PT3 197 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 ZMAT3Q9HA38 289 aaKnown RBP16.6■□□□□ 0.25
NUP88-204ENST00000572290 HES4Q9HCC6 221 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 IGKV1-27A0A075B6S5 117 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 MDFIC2A0A1B0GVS7 189 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 CAPZA1P52907 286 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 ERVK11-1P61568 191 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 DEFB112Q30KQ8 113 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 C12orf54Q6X4T0 127 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 VMO1Q7Z5L0 202 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 DHRSXQ8N5I4 330 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 CD177Q8N6Q3 437 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 DNAAF1Q8NEP3 725 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 OR10AC1Q8NH08 325 aa16.59■□□□□ 0.25
NUP88-204ENST00000572290 GCDHQ92947 438 aaPredicted RBP16.59■□□□□ 0.25
NUP88-204ENST00000572290 C1orf147Q96MC9 270 aaPredicted RBP16.59■□□□□ 0.25
NUP88-204ENST00000572290 FGF20Q9NP95 211 aaPredicted RBP16.59■□□□□ 0.25
NUP88-204ENST00000572290 IGHV1-69DA0A0B4J2H0 117 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 A0A1W2PQ09 198 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 TMEM89A2RUT3 159 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 SLC1A7O00341 560 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 IGHV1-69P01742 117 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 ATF1P18846 271 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 RBP2P50120 134 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 GBX2P52951 348 aaPredicted RBP16.58■□□□□ 0.24
NUP88-204ENST00000572290 ATP1B3P54709 279 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 UTS2BQ765I0 119 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 ZNF561Q8N587 486 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 SETD9Q8NE22 299 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 OR13C3Q8NGS6 347 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 CNIH3Q8TBE1 160 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 ZDHHC16Q969W1 377 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 CEP19Q96LK0 163 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 JAM3Q9BX67 310 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 ELL3Q9HB65 397 aaPredicted RBP16.58■□□□□ 0.24
NUP88-204ENST00000572290 MTCH1Q9NZJ7 389 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 OR14J1Q9UGF5 321 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 WNK2Q9Y3S1 2297 aa16.58■□□□□ 0.24
NUP88-204ENST00000572290 TRBV23-1A0A0A0MS06 115 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 IGKV1-9A0A0C4DH69 117 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 E9PI62 339 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 CLDN34H7C241 214 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 KNG1P01042 644 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 RPSAP08865 295 aaKnown RBP16.57■□□□□ 0.24
NUP88-204ENST00000572290 CCDC159P0C7I6 412 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 LIMS3P0CW19 117 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 LIMS4P0CW20 117 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 PRKACBP22694 351 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 AZGP1P25311 298 aaKnown RBP16.57■□□□□ 0.24
NUP88-204ENST00000572290 CEBPDP49716 269 aaPredicted RBP16.57■□□□□ 0.24
NUP88-204ENST00000572290 ADARB1P78563 741 aaKnown RBP16.57■□□□□ 0.24
NUP88-204ENST00000572290 SLC9A3R2Q15599 337 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 SLC25A26Q70HW3 274 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 OR51A4Q8NGJ6 313 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 HAVCR2Q8TDQ0 301 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 SLAMF9Q96A28 289 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 PRDM13Q9H4Q3 707 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 SIRT7Q9NRC8 400 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 STAB1Q9NY15 2570 aa16.57■□□□□ 0.24
NUP88-204ENST00000572290 IRGMA1A4Y4 181 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 CASQ2O14958 399 aaPredicted RBP16.56■□□□□ 0.24
NUP88-204ENST00000572290 INMTO95050 263 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 RNASE1P07998 156 aaKnown RBP16.56■□□□□ 0.24
NUP88-204ENST00000572290 OCM2P0CE71 109 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 OCMP0CE72 109 aaPredicted RBP16.56■□□□□ 0.24
NUP88-204ENST00000572290 DCKP27707 260 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 OGFRL1Q5TC84 451 aaPredicted RBP16.56■□□□□ 0.24
NUP88-204ENST00000572290 LHFPL2Q6ZUX7 228 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 PDZD9Q8IXQ8 264 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 FAM185AQ8N0U4 392 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 Q8N7P7 452 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 SLC25A28Q96A46 364 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 SPSB1Q96BD6 273 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 COMMD4Q9H0A8 199 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 NOX4Q9NPH5 578 aa16.56■□□□□ 0.24
NUP88-204ENST00000572290 TMEM212A6NML5 194 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 F8VVB4 439 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 F8VWA3 439 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 M0R1W7 72 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 ZFPL1O95159 310 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 CYB5AP00167 134 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 POU3F4P49335 361 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 COMPP49747 757 aaPredicted RBP16.55■□□□□ 0.24
NUP88-204ENST00000572290 MTCP1P56278 107 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 IL18R1Q13478 541 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 BLMHQ13867 455 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 METAP1DQ6UB28 335 aaPredicted RBP16.55■□□□□ 0.24
NUP88-204ENST00000572290 C1orf122Q6ZSJ8 110 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 MKXQ8IYA7 352 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 OR13C9Q8NGT0 318 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 OR5AK2Q8NH90 309 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 OPALINQ96PE5 141 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 ANK2Q01484 3957 aa16.55■□□□□ 0.24
NUP88-204ENST00000572290 TRBV2A0A0J9YWF9 115 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms