RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GPR119Q8TDV5 335 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 ZFP90Q8TF47 636 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 PHLDA1Q8WV24 401 aaPredicted RBP5.12□□□□□ -1.59
VPS53-212ENST00000572259 RAB8BQ92930 207 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 RNF170Q96K19 258 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 CNN2Q99439 309 aaKnown RBP5.12□□□□□ -1.59
VPS53-212ENST00000572259 ECSITQ9BQ95 431 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 EBF4Q9BQW3 602 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 SFXN3Q9BWM7 321 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 CXXC4Q9H2H0 198 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 NIPAL2Q9H841 368 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 NECAP2Q9NVZ3 263 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 SIGLEC8Q9NYZ4 499 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 NDUFAF1Q9Y375 327 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 KCNE3Q9Y6H6 103 aa5.12□□□□□ -1.59
VPS53-212ENST00000572259 ABCA12Q86UK0 2595 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 UNC79Q9P2D8 2635 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 KIAA1549Q9HCM3 1950 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 NPIPA5A0A0B4J1W7 369 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 TRBV5-5A0A0J9YX44 114 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 NPIPB9F8W1W9 429 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 BLOC1S5-TXNDC5H3BN57 136 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 H3BNX3 289 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CASKO14936 926 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 SNAI2O43623 268 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 SERPINB7O75635 380 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 UGT2B17O75795 530 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CA1P00915 261 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 IFNW1P05000 195 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 IFNA8P32881 189 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ACVR1BP36896 505 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CTBP2P56545 445 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 B3GALT5-AS1P59052 145 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 PITPNAQ00169 270 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 PAX2Q02962 417 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ZNF117Q03924 483 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 GLO1Q04760 184 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 RBBP4Q09028 425 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 RGNQ15493 299 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CD226Q15762 336 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 LIN52Q52LA3 116 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 TP53I3Q53FA7 332 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 FGD3Q5JSP0 725 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 PAPPA-AS1Q5QFB9 102 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 UTF1Q5T230 341 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 HBMQ6B0K9 141 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 TYW3Q6IPR3 259 aaKnown RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 C3orf33Q6P1S2 294 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 FRRS1Q6ZNA5 592 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 Q6ZTK2 550 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 NCCRP1Q6ZVX7 275 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 ZNF550Q7Z398 422 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 AKAP14Q86UN6 197 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 SLC30A8Q8IWU4 369 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 RPRMLQ8N4K4 120 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CNEP1R1Q8N9A8 125 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 OR5M1Q8NGP8 315 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 OR9I1Q8NGQ6 314 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 OR2V1Q8NHB1 315 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 C8orf46Q8TAG6 207 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 SMAP2Q8WU79 429 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 RNASE6Q93091 150 aaKnown RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 CPNE4Q96A23 557 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 ZHX1-C8orf76Q96EF9 292 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 DUS3LQ96G46 650 aaKnown RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 SDSLQ96GA7 329 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 C4orf45Q96LM5 186 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 RNF145Q96MT1 663 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 NIPSNAP3BQ9BS92 247 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ULBP2Q9BZM5 246 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 UCK2Q9BZX2 261 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 VCX3AQ9NNX9 186 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 KRCC1Q9NPI7 259 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 EXOSC3Q9NQT5 275 aaKnown RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 FGFR1OP2Q9NVK5 253 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ZNF446Q9NWS9 450 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 USE1Q9NZ43 259 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CLCF1Q9UBD9 225 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 CLEC2DQ9UHP7 191 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ICAM5Q9UMF0 924 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 AMDHD2Q9Y303 409 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 LRRC42Q9Y546 428 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 TSSC4Q9Y5U2 329 aaPredicted RBP5.11□□□□□ -1.59
VPS53-212ENST00000572259 MAST4O15021 2626 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ALPK2Q86TB3 2170 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 ROS1P08922 2347 aa5.11□□□□□ -1.59
VPS53-212ENST00000572259 RPS10-NUDT3A0A1W2PQS6 291 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 NKX2-6A6NCS4 301 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 BBIP1A8MTZ0 92 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 EEF1E1-BLOC1S5C9J1V9 151 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 SMLR1H3BR10 107 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 ARID1AO14497 2285 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 EEF1E1O43324 174 aaKnown RBP5.1□□□□□ -1.59
VPS53-212ENST00000572259 EFNA2O43921 213 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 CCDC22O60826 627 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 BCHEP06276 602 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 GPIP06744 558 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 TFPTP0C1Z6 253 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 PSG1P11464 419 aa5.1□□□□□ -1.59
VPS53-212ENST00000572259 HTR2CP28335 458 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms