RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SF3B6Q9Y3B4 125 aaKnown RBP17.24■□□□□ 0.35
VPS53-210ENST00000571456 DOCK11Q5JSL3 2073 aa17.24■□□□□ 0.35
VPS53-210ENST00000571456 TENM1Q9UKZ4 2725 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 TRIM64CA6NLI5 447 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 GLRA1P23415 457 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 KISS1Q15726 138 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 SMIM21Q3B7S5 101 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 C11orf91Q3C1V1 193 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 NLRC3Q7RTR2 1065 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 CALHM1Q8IU99 346 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 PNLDC1Q8NA58 520 aaKnown RBP17.23■□□□□ 0.35
VPS53-210ENST00000571456 PATZ1Q9HBE1 687 aaKnown RBP17.23■□□□□ 0.35
VPS53-210ENST00000571456 TCF7L1Q9HCS4 588 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 DCAF16Q9NXF7 216 aa17.23■□□□□ 0.35
VPS53-210ENST00000571456 PKD1L1Q8TDX9 2849 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 KCNAB3O43448 404 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 UCHL1P09936 223 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 BMXP51813 675 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 SRSF2Q01130 221 aaKnown RBP17.22■□□□□ 0.35
VPS53-210ENST00000571456 PDZK1IP1Q13113 114 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 TMEM249Q2WGJ8 235 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 HSD17B12Q53GQ0 312 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 CD200R1LQ6Q8B3 271 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 FIP1L1Q6UN15 594 aaKnown RBP17.22■□□□□ 0.35
VPS53-210ENST00000571456 CEACAM19Q7Z692 300 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 TMIGD2Q96BF3 282 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 FOXRED1Q96CU9 486 aaPredicted RBP17.22■□□□□ 0.35
VPS53-210ENST00000571456 NRIP2Q9BQI9 281 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 NOX4Q9NPH5 578 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 KAAG1Q9UBP8 84 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 DNAJB11Q9UBS4 358 aa17.22■□□□□ 0.35
VPS53-210ENST00000571456 IGKV1-27A0A075B6S5 117 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 IGHV2-5P01817 119 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 NPY4RP50391 375 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 LMO4P61968 165 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 SSX1Q16384 188 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 DMRTC1Q5HYR2 192 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 ATPAF1Q5TC12 328 aaPredicted RBP17.21■□□□□ 0.35
VPS53-210ENST00000571456 ASPHD2Q6ICH7 369 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 PXT1Q8NFP0 134 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 MUL1Q969V5 352 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 CEP19Q96LK0 163 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 GPER1Q99527 375 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 TMEM246Q9BRR3 403 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 ZNF665Q9H7R5 613 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 HES4Q9HCC6 221 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 PCDHB16Q9NRJ7 776 aa17.21■□□□□ 0.35
VPS53-210ENST00000571456 TRDV1A0A1B0GX56 115 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 B4DSR2 109 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 TRAPPC2LH3BP13 241 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 AKR7A2O43488 359 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 RHBDL1O75783 438 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 JUNBP17275 347 aaPredicted RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 SRMP19623 302 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 ZNF93P35789 620 aaPredicted RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 PSMD7P51665 324 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 ERVK11-1P61568 191 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 RPS25P62851 125 aaKnown RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 NEDD8Q15843 81 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 DDI2Q5TDH0 399 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 SLC25A26Q70HW3 274 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 SLC36A1Q7Z2H8 476 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 ANGPTL5Q86XS5 388 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 BOLLQ8N9W6 283 aaKnown RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 OR51F2Q8NH61 342 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 TMEM203Q969S6 136 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 NEIL1Q96FI4 390 aaPredicted RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 METTL17Q9H7H0 456 aaPredicted RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 SEBOXQ9HB31 216 aaPredicted RBP17.2■□□□□ 0.34
VPS53-210ENST00000571456 TMEM160Q9NX00 188 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 NLKQ9UBE8 527 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 LPAR3Q9UBY5 353 aa17.2■□□□□ 0.34
VPS53-210ENST00000571456 MALRD1Q5VYJ5 2156 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 CEACAM18A8MTB9 384 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 F5H0A9 414 aaPredicted RBP17.19■□□□□ 0.34
VPS53-210ENST00000571456 C3orf80F5H4A9 247 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.19■□□□□ 0.34
VPS53-210ENST00000571456 GABRPO00591 440 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 PIN1P1O15428 100 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 SYNGR1O43759 233 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 INMTO95050 263 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 NXPH2O95156 264 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 RPS2P15880 293 aaKnown RBP17.19■□□□□ 0.34
VPS53-210ENST00000571456 EGR1P18146 543 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 POU3F4P49335 361 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 TIMM50Q3ZCQ8 353 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 CYB5R2Q6BCY4 276 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 TMEM91Q6ZNR0 172 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 OR8B3Q8NGG8 313 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 OR51A2Q8NGJ7 313 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 OR8B2Q96RD0 313 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 UQCC2Q9BRT2 126 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 SNTG1Q9NSN8 517 aa17.19■□□□□ 0.34
VPS53-210ENST00000571456 TRAV8-7A0A075B6U6 113 aa17.18■□□□□ 0.34
VPS53-210ENST00000571456 MAGEA13PA6NCF6 341 aa17.18■□□□□ 0.34
VPS53-210ENST00000571456 NKX6-3A6NJ46 265 aa17.18■□□□□ 0.34
VPS53-210ENST00000571456 GPR37O15354 613 aa17.18■□□□□ 0.34
VPS53-210ENST00000571456 ZNF780AO75290 641 aaPredicted RBP17.18■□□□□ 0.34
VPS53-210ENST00000571456 FOXH1O75593 365 aa17.18■□□□□ 0.34
VPS53-210ENST00000571456 KDM4BO94953 1096 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms