RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 HINT2Q9BX68 163 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 NKX6-2Q9C056 277 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 PRO1933Q9H354 126 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 C6orf50Q9HD87 102 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 PDP1Q9P0J1 537 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 NEUROG3Q9Y4Z2 214 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 ADAMTS12P58397 1594 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 ADGBQ8N7X0 1667 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 MAP2P11137 1827 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 E7EWF7 191 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 KRTAP4-16G5E9R7 235 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 EMC8O43402 210 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 PLIN3O60664 434 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 IFNA7P01567 189 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 PVALBP20472 110 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 CNR1P21554 472 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 CEACAM3P40198 252 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 NAA10P41227 235 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 CSNK1EP49674 416 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 RAB2AP61019 212 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 ERVS71-1P61550 626 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 PKIAP61925 76 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 CAV1Q03135 178 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 DAZ2Q13117 558 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 UNC119Q13432 240 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 DGCR6Q14129 220 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 SPA17Q15506 151 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 SURF2Q15527 256 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 ZBTB6Q15916 424 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 IL17AQ16552 155 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 HNRNPA1L2Q32P51 320 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 COQ5Q5HYK3 327 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 SYT6Q5T7P8 510 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 ACP7Q6ZNF0 438 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 EID2Q8N6I1 236 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 PACRGLQ8N7B6 248 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 ITFG1Q8TB96 612 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 DYNC2LI1Q8TCX1 351 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 UCN3Q969E3 161 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 SDHCQ99643 169 aaPredicted RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 RIOK2Q9BVS4 552 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 SNHG12Q9BXW3 62 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 ING2Q9H160 280 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 TMEM38AQ9H6F2 299 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 DAZ3Q9NR90 486 aaKnown RBP4.01□□□□□ -1.77
UBR1-208ENST00000569066 SMAD5-AS1Q9Y6J3 95 aa4.01□□□□□ -1.77
UBR1-208ENST00000569066 F6UB75 175 aa4□□□□□ -1.77
UBR1-208ENST00000569066 K7EP13 123 aa4□□□□□ -1.77
UBR1-208ENST00000569066 PDCD5O14737 125 aa4□□□□□ -1.77
UBR1-208ENST00000569066 CHST10O43529 356 aa4□□□□□ -1.77
UBR1-208ENST00000569066 OR2J2O76002 312 aa4□□□□□ -1.77
UBR1-208ENST00000569066 PRDX3P30048 256 aaKnown RBP4□□□□□ -1.77
UBR1-208ENST00000569066 RPA3P35244 121 aaPredicted RBP4□□□□□ -1.77
UBR1-208ENST00000569066 CTRLP40313 264 aa4□□□□□ -1.77
UBR1-208ENST00000569066 CCR8P51685 355 aa4□□□□□ -1.77
UBR1-208ENST00000569066 SUB1P53999 127 aaKnown RBP eCLIP4□□□□□ -1.77
UBR1-208ENST00000569066 DNAJB13P59910 316 aa4□□□□□ -1.77
UBR1-208ENST00000569066 IRF8Q02556 426 aa4□□□□□ -1.77
UBR1-208ENST00000569066 C2orf80Q0P641 193 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TWF1Q12792 350 aa4□□□□□ -1.77
UBR1-208ENST00000569066 DENND4AQ7Z401 1863 aa4□□□□□ -1.77
UBR1-208ENST00000569066 CBLN2Q8IUK8 224 aa4□□□□□ -1.77
UBR1-208ENST00000569066 ACER1Q8TDN7 264 aa4□□□□□ -1.77
UBR1-208ENST00000569066 RXFP4Q8TDU9 374 aa4□□□□□ -1.77
UBR1-208ENST00000569066 NDRG1Q92597 394 aaKnown RBP4□□□□□ -1.77
UBR1-208ENST00000569066 TOP1MTQ969P6 601 aa4□□□□□ -1.77
UBR1-208ENST00000569066 LRRC58Q96CX6 371 aa4□□□□□ -1.77
UBR1-208ENST00000569066 MRPS24Q96EL2 167 aaKnown RBP4□□□□□ -1.77
UBR1-208ENST00000569066 HYLS1Q96M11 299 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TMEM56Q96MV1 263 aa4□□□□□ -1.77
UBR1-208ENST00000569066 ZNF382Q96SR6 550 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TEAD3Q99594 435 aa4□□□□□ -1.77
UBR1-208ENST00000569066 USP42Q9H9J4 1324 aaKnown RBP4□□□□□ -1.77
UBR1-208ENST00000569066 CCNB1IP1Q9NPC3 277 aa4□□□□□ -1.77
UBR1-208ENST00000569066 MED9Q9NWA0 146 aa4□□□□□ -1.77
UBR1-208ENST00000569066 LYARQ9NX58 379 aaKnown RBP4□□□□□ -1.77
UBR1-208ENST00000569066 XCL2Q9UBD3 114 aa4□□□□□ -1.77
UBR1-208ENST00000569066 DKKL1Q9UK85 242 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TMEM56-RWDD3S4R434 201 aa4□□□□□ -1.77
UBR1-208ENST00000569066 A0A1B0GUL6 1792 aa4□□□□□ -1.77
UBR1-208ENST00000569066 ATP7BP35670 1465 aa4□□□□□ -1.77
UBR1-208ENST00000569066 SERPINE3A8MV23 424 aa4□□□□□ -1.77
UBR1-208ENST00000569066 A8MWP6 167 aa4□□□□□ -1.77
UBR1-208ENST00000569066 MKRN2OSH3BPM6 223 aa4□□□□□ -1.77
UBR1-208ENST00000569066 M0R3G1 203 aa4□□□□□ -1.77
UBR1-208ENST00000569066 AIPO00170 330 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TGOLN2O43493 480 aa4□□□□□ -1.77
UBR1-208ENST00000569066 OR2F2O95006 317 aa4□□□□□ -1.77
UBR1-208ENST00000569066 CTDNEP1O95476 244 aa4□□□□□ -1.77
UBR1-208ENST00000569066 KLF8O95600 359 aaPredicted RBP4□□□□□ -1.77
UBR1-208ENST00000569066 ACTL6AO96019 429 aa4□□□□□ -1.77
UBR1-208ENST00000569066 RFX3P48380 749 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TDGF1P3P51864 188 aa4□□□□□ -1.77
UBR1-208ENST00000569066 DEFA1P59665 94 aa4□□□□□ -1.77
UBR1-208ENST00000569066 DEFA3P59666 94 aa4□□□□□ -1.77
UBR1-208ENST00000569066 DEFA5Q01523 94 aa4□□□□□ -1.77
UBR1-208ENST00000569066 VAX1Q5SQQ9 334 aa4□□□□□ -1.77
UBR1-208ENST00000569066 C11orf53Q8IXP5 236 aa4□□□□□ -1.77
UBR1-208ENST00000569066 KATNAL2Q8IYT4 538 aa4□□□□□ -1.77
UBR1-208ENST00000569066 TMEM104Q8NE00 496 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 270.3 ms