RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ETV3LQ6ZN32 361 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 PNLDC1Q8NA58 520 aaKnown RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 LURAP1Q96LR2 239 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ACKR4Q9NPB9 350 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ASH2LQ9UBL3 628 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 TCFL5Q9UL49 500 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 LOC102723996A0A087X1L8 192 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 TRBV11-1A0A0K0K1C0 115 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 SHISA8B8ZZ34 492 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 MASP2O00187 686 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 F12P00748 615 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 CYC1P08574 325 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 GLRA1P23415 457 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 CDAP32320 146 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 SNU13P55769 128 aaKnown RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 CSNK2A1P68400 391 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 MFAP5Q13361 173 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 KCNMB1Q16558 191 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 SLC25A47Q6Q0C1 308 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 SSX9Q7RTT3 188 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 CSNK2A3Q8NEV1 391 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 OR51T1Q8NGJ9 327 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 OR51F2Q8NH61 342 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 GLYATL2Q8WU03 294 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 TAF9BQ9HBM6 251 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 PRR13Q9NZ81 148 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 TREM2Q9NZC2 230 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 KLRF1Q9NZS2 232 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 PPP4R1LQ9P1A2 415 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 AKAP13Q12802 2813 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 IGHV1-45A0A0A0MS14 117 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 RER1O15258 196 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 CELA2AP08217 269 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 ACAA1P09110 424 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 RNF224P0DH78 156 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 MUC1P15941 1255 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 ALDH3B1P43353 468 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 PDZK1IP1Q13113 114 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 SKA3Q8IX90 412 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 OR6X1Q8NH79 312 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 RNF138Q8WVD3 245 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 PNRC2Q9NPJ4 139 aaKnown RBP11.59□□□□□ -0.55
VPS4A-204ENST00000566354 DLL3Q9NYJ7 618 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 EHFQ9NZC4 300 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 GSKIPQ9P0R6 139 aa11.59□□□□□ -0.55
VPS4A-204ENST00000566354 EXPH5Q8NEV8 1989 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 IGKV1-9A0A0C4DH69 117 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 RNASEK-C17orf49H0YIS7 233 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 SDCBPO00560 298 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 TRAF3IP2O43734 574 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 COX6A1P12074 109 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 HOXC12P31275 282 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 OTX2P32243 289 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 PTGFRP43088 359 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 GRB2P62993 217 aaKnown RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 ECH1Q13011 328 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 ARL6IP1Q15041 203 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 PLPPR5Q32ZL2 321 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 AVPI1Q5T686 147 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 FAM57BQ71RH2 274 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF283Q8N7M2 679 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 SEBOXQ9HB31 216 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 GAB2Q9UQC2 676 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 FAM96BQ9Y3D0 163 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 SERPINE3A8MV23 424 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 CST4P01036 141 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 HOXB5P09067 269 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 ADH6P28332 368 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 SULT1A2P50226 295 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 S100A10P60903 97 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 KISS1Q15726 138 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 CHRFAM7AQ494W8 412 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 RPL7L1Q6DKI1 246 aaKnown RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 TMEM200AQ86VY9 491 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 OR14K1Q8NGZ2 314 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 POC1BQ8TC44 478 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 MIOXQ9UGB7 285 aa11.58□□□□□ -0.56
VPS4A-204ENST00000566354 C14orf166Q9Y224 244 aaKnown RBP11.58□□□□□ -0.56
VPS4A-204ENST00000566354 PCSK5Q92824 1860 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 IGLV3-32A0A0A0MS00 114 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 FOXI3A8MTJ6 420 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 GFRA3O60609 400 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 MED6O75586 246 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 FARS2O95363 451 aaKnown RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 IFNA2P01563 188 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CRYBA1P05813 215 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CD5P06127 495 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 HKR1P10072 659 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CTSSP25774 331 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 BLVRBP30043 206 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ECI1P42126 302 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CARD17Q5XLA6 110 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 RTL6Q6ICC9 239 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CFAP161Q6P656 301 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 PPP1R32Q7Z5V6 425 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 IMMP1LQ96LU5 166 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 OXGR1Q96P68 337 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 CNTNAP3Q9BZ76 1288 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 ZNF700Q9H0M5 742 aa11.57□□□□□ -0.56
VPS4A-204ENST00000566354 NIT2Q9NQR4 276 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms