RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GNB2P62879 340 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 LCN2P80188 198 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 IL24Q13007 206 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 TBCEQ15813 527 aaPredicted RBP14.39□□□□□ -0.11
CLN3-217ENST00000565354 ZNF367Q7RTV3 350 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 FAM90A1Q86YD7 464 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 CALHM1Q8IU99 346 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 MKXQ8IYA7 352 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 POC1AQ8NBT0 407 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 RFT1Q96AA3 541 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 TMED9Q9BVK6 235 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 WDR13Q9H1Z4 485 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 SNTG1Q9NSN8 517 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 RASL12Q9NYN1 266 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 NLKQ9UBE8 527 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 LRCH1Q9Y2L9 728 aa14.39□□□□□ -0.11
CLN3-217ENST00000565354 TRBV5-5A0A0J9YX44 114 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 F5H0A9 414 aaPredicted RBP14.38□□□□□ -0.11
CLN3-217ENST00000565354 WNT2P09544 360 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 PGA5P0DJD9 388 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 PCMT1P22061 227 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 MPZP25189 248 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 MAPK3P27361 379 aaPredicted RBP14.38□□□□□ -0.11
CLN3-217ENST00000565354 PITPNBP48739 271 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 MLLT11Q13015 90 aaPredicted RBP14.38□□□□□ -0.11
CLN3-217ENST00000565354 SMIM21Q3B7S5 101 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 LIPKQ5VXJ0 399 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 LYPD2Q6UXB3 125 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SLC25A26Q70HW3 274 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SLC36A1Q7Z2H8 476 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SATL1Q86VE3 508 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 BATF2Q8N1L9 274 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 MS4A15Q8N5U1 240 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 OR5T2Q8NGG2 359 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SLAMF9Q96A28 289 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 TMEM186Q96B77 213 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 C12orf43Q96C57 262 aaKnown RBP14.38□□□□□ -0.11
CLN3-217ENST00000565354 SEH1LQ96EE3 360 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 ZNF488Q96MN9 340 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SPACA5Q96QH8 159 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 OR14A2Q96R54 314 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 GPER1Q99527 375 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 SSBP3Q9BWW4 388 aaPredicted RBP14.38□□□□□ -0.11
CLN3-217ENST00000565354 ISYNA1Q9NPH2 558 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 CLN8Q9UBY8 286 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 OR5V1Q9UGF6 321 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 LRRC42Q9Y546 428 aa14.38□□□□□ -0.11
CLN3-217ENST00000565354 IGKV1-27A0A075B6S5 117 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 TRAV20A0A0B4J274 112 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 ZNF879B4DU55 563 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 TMPRSS2O15393 492 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 ALX3O95076 343 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 GABRA2P47869 451 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 DVL1P1P54792 670 aaPredicted RBP14.37□□□□□ -0.11
CLN3-217ENST00000565354 SEC61A1P61619 476 aaKnown RBP14.37□□□□□ -0.11
CLN3-217ENST00000565354 GPR50Q13585 617 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 DOC2BQ14184 412 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 SGMS2Q8NHU3 365 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 ZFAND2BQ8WV99 257 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 CEP19Q96LK0 163 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 CCL13Q99616 98 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 MGLLQ99685 303 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 ACOT13Q9NPJ3 140 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 HIF1ANQ9NWT6 349 aa14.37□□□□□ -0.11
CLN3-217ENST00000565354 A0A1W2PPK0 400 aa14.36□□□□□ -0.11
CLN3-217ENST00000565354 TRAPPC2LH3BP13 241 aa14.36□□□□□ -0.11
CLN3-217ENST00000565354 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.36□□□□□ -0.11
CLN3-217ENST00000565354 NPY4RP50391 375 aa14.36□□□□□ -0.11
CLN3-217ENST00000565354 RPS11P62280 158 aaKnown RBP eCLIP14.36□□□□□ -0.11
CLN3-217ENST00000565354 FIP1L1Q6UN15 594 aaKnown RBP14.36□□□□□ -0.11
CLN3-217ENST00000565354 ACP7Q6ZNF0 438 aa14.36□□□□□ -0.11
CLN3-217ENST00000565354 OR5D18Q8NGL1 313 aa14.36□□□□□ -0.11
CLN3-217ENST00000565354 A0A0A6YYJ9 748 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 OR2AT4A6NND4 320 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 NOS1APO75052 506 aaPredicted RBP14.35□□□□□ -0.11
CLN3-217ENST00000565354 VENTXO95231 258 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 TMEM225BP0DP42 221 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 BDKRB2P30411 391 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 TGFBR2P37173 567 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 EMX1Q04741 257 aaPredicted RBP14.35□□□□□ -0.11
CLN3-217ENST00000565354 TRAM1Q15629 374 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 KISS1Q15726 138 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 KCTD21Q4G0X4 260 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 ACSM3Q53FZ2 586 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 DDI2Q5TDH0 399 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 DCAF12L2Q5VW00 463 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 STUMQ69YW2 141 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 Q8IYB0 196 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 SPARTQ8N0X7 666 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 PNLDC1Q8NA58 520 aaKnown RBP14.35□□□□□ -0.11
CLN3-217ENST00000565354 OR51A2Q8NGJ7 313 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 EMG1Q92979 244 aaKnown RBP14.35□□□□□ -0.11
CLN3-217ENST00000565354 ORAI1Q96D31 301 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 DERL3Q96Q80 235 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 FAM192AQ9GZU8 254 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 DNTTIP1Q9H147 329 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 SMURF1Q9HCE7 757 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 TMEM138Q9NPI0 162 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 OR14J1Q9UGF5 321 aa14.35□□□□□ -0.11
CLN3-217ENST00000565354 A0A0G2JMP0 313 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms