RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TMEM68Q96MH6 324 aa14.35□□□□□ -0.11
CUX1-213ENST00000549414 USB1Q9BQ65 265 aaKnown RBP14.35□□□□□ -0.11
CUX1-213ENST00000549414 SPG11Q96JI7 2443 aa14.35□□□□□ -0.11
CUX1-213ENST00000549414 MS4A18H0YCH9 400 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 TO15178 435 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 UBE2KP61086 200 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 HBG1P69891 147 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 HBG2P69892 147 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 RAB31Q13636 194 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 RAB32Q13637 225 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 MS4A18Q3C1V0 323 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 HS3ST3B1Q9Y662 390 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 NLRC5Q86WI3 1866 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 ACACBO00763 2458 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 A0A1W2PPC1 479 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 ZFP92A6NM28 416 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 BCL2L11O43521 198 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 HPNP05981 417 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 AADACP22760 399 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 LSM6P62312 80 aaKnown RBP14.34□□□□□ -0.11
CUX1-213ENST00000549414 MOGAT2Q3SYC2 334 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 CST9LP1Q5W188 147 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 KIF25Q9UIL4 384 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 ENSAO43768 121 aaKnown RBP14.34□□□□□ -0.11
CUX1-213ENST00000549414 FPR2P25090 351 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 SPICQ8N5J4 248 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 TP53BP1Q12888 1972 aaPredicted RBP14.34□□□□□ -0.11
CUX1-213ENST00000549414 PLXNA3P51805 1871 aa14.34□□□□□ -0.11
CUX1-213ENST00000549414 MED19A0JLT2 244 aaPredicted RBP14.33□□□□□ -0.11
CUX1-213ENST00000549414 JTBO76095 146 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 P2RX3P56373 397 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 LGALSLQ3ZCW2 172 aaPredicted RBP14.33□□□□□ -0.11
CUX1-213ENST00000549414 SEZ6L2Q6UXD5 910 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 DYRK2Q92630 601 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 S100PBPQ96BU1 408 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 ZNF75AQ96N20 296 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 SPSB2Q99619 263 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 WDR13Q9H1Z4 485 aa14.33□□□□□ -0.11
CUX1-213ENST00000549414 ELF5Q9UKW6 265 aaPredicted RBP14.33□□□□□ -0.11
CUX1-213ENST00000549414 NPIPB9F8W1W9 429 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 GLAP06280 429 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 CTXN2P0C2S0 81 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 TMEM104Q8NE00 496 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 WDR54Q9H977 334 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 ZNF629Q9UEG4 869 aaPredicted RBP14.33□□□□□ -0.12
CUX1-213ENST00000549414 CLLU1Q5K131 121 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 SCCPDHQ8NBX0 429 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 ZBTB44Q8NCP5 570 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 ST7LQ8TDW4 575 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 OPN4Q9UHM6 478 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 H7C1Q1 480 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 MPC2O95563 127 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 HPP00738 406 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 SLC30A7Q8NEW0 376 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 OR5AP2Q8NGF4 316 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 RFESDQ8TAC1 157 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 MED30Q96HR3 178 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 SLC39A9Q9NUM3 307 aa14.33□□□□□ -0.12
CUX1-213ENST00000549414 GEMIN2O14893 280 aaKnown RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 SNCAP37840 140 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 OR1S2Q8NGQ3 325 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 FAM117AQ9C073 453 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 TIMM8BQ9Y5J9 83 aaPredicted RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 MYO7BQ6PIF6 2116 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 MLF1P58340 268 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 GNG3P63215 75 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 RSPO4Q2I0M5 234 aaPredicted RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 STPG1Q5TH74 334 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 OR14K1Q8NGZ2 314 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 OR4A16Q8NH70 328 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 KCNK17Q96T54 332 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 HDHD3Q9BSH5 251 aaPredicted RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 PECRQ9BY49 303 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 GHITMQ9H3K2 345 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 PRMT8Q9NR22 394 aaPredicted RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 URGCP-MRPS24S4R325 110 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 GP1BAP07359 652 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 GSK3AP49840 483 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 RAB4BP61018 213 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 MICBQ29980 383 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 FRZBQ92765 325 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 SLC25A32Q9H2D1 315 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 RAB9BQ9NP90 201 aa14.32□□□□□ -0.12
CUX1-213ENST00000549414 PURGQ9UJV8 347 aaKnown RBP14.32□□□□□ -0.12
CUX1-213ENST00000549414 A0A087WV48 116 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 E5RGE8 158 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 PDCD6O75340 191 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 HAGHQ16775 308 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 ZNF718Q3SXZ3 478 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 LYPD8Q6UX82 237 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 CLEC9AQ6UXN8 241 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 FAM122BQ7Z309 247 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 ZFP62Q8NB50 900 aaPredicted RBP14.31□□□□□ -0.12
CUX1-213ENST00000549414 APCDD1LQ8NCL9 501 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 PILRBQ9UKJ0 227 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 NSG2Q9Y328 171 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 TRBV5-5A0A0J9YX44 114 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 C7orf66A4D0T2 115 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 ZNF891A8MT65 544 aaPredicted RBP14.31□□□□□ -0.12
CUX1-213ENST00000549414 LINC01387J3KSC0 135 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms