RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 A0A1W2PP11 408 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF320A2RRD8 509 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 C5orf52A6NGY3 159 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PGA4P0DJD7 388 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PGA5P0DJD9 388 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 CDAP32320 146 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PSG6Q00889 435 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 RTL6Q6ICC9 239 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 SSX7Q7RTT5 188 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 CYB561D1Q8N8Q1 229 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 OR6C1Q96RD1 312 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 SERTAD4Q9NUC0 356 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 LMX1BO60663 402 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 PSMB3P49720 205 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 COX14Q96I36 57 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 PLEKHA3Q9HB20 300 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 GUSBP08236 651 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 SNCAP37840 140 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 ACAA2P42765 397 aaKnown RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 MFAP5Q13361 173 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 CNN3Q15417 329 aaKnown RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 MPV17LQ2QL34 196 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 PTCRAQ6ISU1 281 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 CPT1CQ8TCG5 803 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 RPS4Y2Q8TD47 263 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF764Q96H86 408 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 SLC46A1Q96NT5 459 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 ANKRD10Q9NXR5 420 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 BOKQ9UMX3 212 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 DOPEY2Q9Y3R5 2298 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 KIF26BQ2KJY2 2108 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 A0A1W2PR80 420 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 TLCD2A6NGC4 264 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 HSPB2A8KAH6 182 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 CER1O95813 267 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 CLDN1O95832 211 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 IAPPP10997 89 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 AADACP22760 399 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 DCDP81605 110 aaKnown RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 C17orf67Q0P5P2 114 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 HSPB2Q16082 182 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 PLCXD3Q63HM9 321 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 AAED1Q7RTV5 226 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 SIRT7Q9NRC8 400 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM184BQ9Y519 407 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-215ENST00000544547 TSC2P49815 1807 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 A0A1W2PPV4 95 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 MT-ATP6P00846 226 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 FAHP16930 419 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 HTR5AP47898 357 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 PRSS12P56730 875 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 HSF1Q00613 529 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 COTL1Q14019 142 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 ANKRD55Q3KP44 614 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 OR51I2Q9H344 312 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 GCM1Q9NP62 436 aa12.64□□□□□ -0.39
LIMS1-215ENST00000544547 G3V3Q6 166 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 EML2O95834 649 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 RRADP55042 308 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 CLDN17P56750 224 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF121P58317 390 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-215ENST00000544547 PMP22Q01453 160 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 H1FNTQ75WM6 255 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-215ENST00000544547 OR2I1PQ8NGU4 316 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 MS4A10Q96PG2 267 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 GFI1Q99684 422 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 SLC26A1Q9H2B4 701 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 RYDENQ9NUL5 291 aaKnown RBP12.63□□□□□ -0.39
LIMS1-215ENST00000544547 SIT1Q9Y3P8 196 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 TRBV5-5A0A0J9YX44 114 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 UBE2CO00762 179 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 PCBD1P61457 104 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 OR5I1Q13606 314 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 LYZL2Q7Z4W2 148 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 OR2C3Q8N628 320 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM52Q8NDY8 209 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 BTF3L4Q96K17 158 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 WFIKKN1Q96NZ8 548 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 ADAM19Q9H013 955 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 GOLT1BQ9Y3E0 138 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 ECI1P42126 302 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 CD226Q15762 336 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 SPANXN5Q5MJ07 72 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 C11orf40Q8WZ69 217 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 V9GYS6 101 aa12.63□□□□□ -0.39
LIMS1-215ENST00000544547 CXorf51AA0A1B0GTR3 108 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 AQP7O14520 342 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 OR2J2O76002 312 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 AADACL3Q5VUY0 350 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 FAM117AQ9C073 453 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 CBLN4Q9NTU7 201 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TINAGQ9UJW2 476 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 GPX4P36969 197 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-215ENST00000544547 KRTDAPP60985 99 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 ERVK-16P61578 105 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 OR2A5Q96R48 311 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 IGHV3-20A0A0C4DH32 117 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 ANKUB1A6NFN9 424 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 TRGC1P0CF51 173 aa12.62□□□□□ -0.39
LIMS1-215ENST00000544547 MGAT2Q10469 447 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms