RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SRRM5B3KS81 715 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 WIPF1O43516 503 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 ZNF205O95201 554 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 RPS2P15880 293 aaKnown RBP8.45□□□□□ -1.06
VPS28-204ENST00000526054 EGR1P18146 543 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 CELP19835 753 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 SOX2P48431 317 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 RBP2P50120 134 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 ATP1B3P54709 279 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 BLMHQ13867 455 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 Q499Y3 187 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 FAM201AQ5SY85 155 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 DCDC5Q6ZRR9 648 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 LHFPL2Q6ZUX7 228 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 NLRC3Q7RTR2 1065 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 ZNF367Q7RTV3 350 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 SPARTQ8N0X7 666 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 PARP16Q8N5Y8 322 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 DEFB108BQ8NET1 73 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 OR5D14Q8NGL3 314 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 AQP3Q92482 292 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 UFD1Q92890 307 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 TMEM106AQ96A25 262 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 CPNE2Q96FN4 548 aaPredicted RBP8.45□□□□□ -1.06
VPS28-204ENST00000526054 OPALINQ96PE5 141 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 OR5M11Q96RB7 305 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 PKIBQ9C010 78 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 PATZ1Q9HBE1 687 aaKnown RBP8.45□□□□□ -1.06
VPS28-204ENST00000526054 TMEM165Q9HC07 324 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 ISYNA1Q9NPH2 558 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 DNAJB11Q9UBS4 358 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 MIOXQ9UGB7 285 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 TRRAPQ9Y4A5 3859 aa8.45□□□□□ -1.06
VPS28-204ENST00000526054 TRBV5-5A0A0J9YX44 114 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 C3orf80F5H4A9 247 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MAGEB3O15480 346 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 NDUFA2O43678 99 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 SULT1B1O43704 296 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 ALX3O95076 343 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 CYB5AP00167 134 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 LHBP01229 141 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 HCKP08631 526 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 HSMCR30P0CW71 290 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MUC1P15941 1255 aaPredicted RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 RAB3AP20336 220 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 GLRA1P23415 457 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MPZP25189 248 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 ZFP36P26651 326 aaKnown RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 MAPK3P27361 379 aaPredicted RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 RBMXP38159 391 aaKnown RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 MAP2K4P45985 399 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 PPP3R1P63098 170 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MLLT11Q13015 90 aaPredicted RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 GPR50Q13585 617 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MICBQ29980 383 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 TEX36Q5VZQ5 186 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 SFRP4Q6FHJ7 346 aaPredicted RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 MS4A15Q8N5U1 240 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 SIGLECL1Q8N7X8 197 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 C19orf18Q8NEA5 215 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 OR8B3Q8NGG8 313 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 OR13C5Q8NGS8 318 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 FCGR1BQ92637 280 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 TMIGD2Q96BF3 282 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 C12orf43Q96C57 262 aaKnown RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 NEIL1Q96FI4 390 aaPredicted RBP8.44□□□□□ -1.06
VPS28-204ENST00000526054 OR8B2Q96RD0 313 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 TMEM246Q9BRR3 403 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 MRI1Q9BV20 369 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 CKLFQ9UBR5 152 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 AUP1Q9Y679 476 aa8.44□□□□□ -1.06
VPS28-204ENST00000526054 IGHV3OR15-7A0A075B7D8 119 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 IGKV1-9A0A0C4DH69 117 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 DNAJC9-AS1A6NH13 148 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 NKX6-3A6NJ46 265 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 F5H0A9 414 aaPredicted RBP8.43□□□□□ -1.06
VPS28-204ENST00000526054 AKR7A2O43488 359 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 SYNGR1O43759 233 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 RHBDL1O75783 438 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 PLATP00750 562 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 PGA5P0DJD9 388 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 RPL5P46777 297 aaKnown RBP8.43□□□□□ -1.06
VPS28-204ENST00000526054 POU3F4P49335 361 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 MTCP1P56278 107 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 GMFBP60983 142 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 SEC61A1P61619 476 aaKnown RBP8.43□□□□□ -1.06
VPS28-204ENST00000526054 RPS11P62280 158 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS28-204ENST00000526054 FOXL1Q12952 345 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 IL24Q13007 206 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 DOC2BQ14184 412 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 NEDD8Q15843 81 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 SMIM21Q3B7S5 101 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 ESCO2Q56NI9 601 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 ANGPTL5Q86XS5 388 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 FAM90A1Q86YD7 464 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 CALHM1Q8IU99 346 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 POC1AQ8NBT0 407 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 DUX5Q96PT3 197 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 OR14A2Q96R54 314 aa8.43□□□□□ -1.06
VPS28-204ENST00000526054 MGLLQ99685 303 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms