RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GGACTQ9BVM4 153 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 RCL1Q9Y2P8 373 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNFX1Q9P2E3 1918 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TRBV11-1A0A0K0K1C0 115 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 OR5B21A6NL26 309 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 PLPP1O14494 284 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF749O43361 778 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TNFSF14O43557 240 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CSN3P07498 182 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 HIST1H1EP10412 219 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 HRH1P35367 487 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC35D3Q5M8T2 416 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 PLXDC2Q6UX71 529 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CISD2Q8N5K1 135 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 DUSP18Q8NEJ0 188 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 PDXPQ96GD0 296 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TAS2R4Q9NYW5 299 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 PIGLQ9Y2B2 252 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 PRSS38A1L453 326 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CLEC18AA5D8T8 446 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 MPC2O95563 127 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 GCSHP23434 173 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 IL24Q13007 206 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC35E4Q6ICL7 350 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF880Q6PDB4 577 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SIRT6Q8N6T7 355 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CLEC18CQ8NCF0 446 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SFRP2Q96HF1 295 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 OR2A5Q96R48 311 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 NCOR1P1Q9H4R4 102 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 HCSTQ9UBK5 93 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC22A13Q9Y226 551 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 KCNK7Q9Y2U2 307 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 R4GN57 208 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLX4Q8IY92 1834 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TAF1LQ8IZX4 1826 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TMED7-TICAM2A0A0A6YYA0 188 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 OR2T8A6NH00 312 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 GUSBP08236 651 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TRA2AQ13595 282 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 GSG1Q2KHT4 349 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TCTN3Q6NUS6 607 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC48A1Q6P1K1 146 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TFAP2EQ6VUC0 442 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TP53I13Q8NBR0 393 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TAAR2Q9P1P5 351 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CACFD1Q9UGQ2 172 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 COA3Q9Y2R0 106 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 TMED7Q9Y3B3 224 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 LRRC30A6NM36 301 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 GNG7O60262 68 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 MT-CO3P00414 261 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ADIPOQQ15848 244 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 PARM1Q6UWI2 310 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 GPBAR1Q8TDU6 330 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 VCX2Q9H322 139 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 VAMP5O95183 116 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 COX6B1P14854 86 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 S100A4P26447 101 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 OR1C1Q15619 314 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 DUSP5Q16690 384 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 MARVELD3Q96A59 401 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 DERL3Q96Q80 235 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 SIGMAR1Q99720 223 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 DECR2Q9NUI1 292 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 HSF4Q9ULV5 492 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 WIPI2Q9Y4P8 454 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 QSER1Q2KHR3 1735 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 H3BQ15 152 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 MRPL33O75394 65 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 KLKB1P03952 638 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 BCL3P20749 454 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 NMUP48645 174 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 RAB38P57729 211 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 CLN3Q13286 438 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 PABPC1L2AQ5JQF8 200 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ELFN2Q5R3F8 820 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 OTPQ5XKR4 325 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ABHD17CQ6PCB6 329 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ASCL4Q6XD76 172 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 MARCH3Q86UD3 253 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ARRDC1Q8N5I2 433 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM229BQ8NBD8 167 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 OR6C1Q96RD1 312 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC25A33Q9BSK2 321 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ASIC5Q9NY37 505 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 LRRC37AA6NMS7 1700 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 M0R3E3 92 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 HMGN4O00479 90 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 HCRTR1O43613 425 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 PPIAP62937 165 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF506Q5JVG8 444 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 PRSS54Q6PEW0 395 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 C17orf78Q8N4C9 275 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ISG20L2Q9H9L3 353 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 ELF5Q9UKW6 265 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 AMDHD2Q9Y303 409 aa7.84□□□□□ -1.15
LIMCH1-218ENST00000513024 A0A1B0GTL3 188 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 LOC107986453A0A1B0GWG9 222 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 TMEM202A6NGA9 273 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms