RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 A4GNTQ9UNA3 340 aa6.88□□□□□ -1.31
SCN1A-207ENST00000507401 CARHSP1Q9Y2V2 147 aaKnown RBP6.88□□□□□ -1.31
SCN1A-207ENST00000507401 ATRQ13535 2644 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 TRAV6A0A075B6T7 132 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 DISC1C4P0D8 188 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 GATBO75879 557 aaKnown RBP6.87□□□□□ -1.31
SCN1A-207ENST00000507401 HTR3BO95264 441 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 F13BP05160 661 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 LPLP06858 475 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 DAOP14920 347 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 ZNF3P17036 446 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 CXCL3P19876 107 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 TNFRSF1BP20333 461 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 RAB3BP20337 219 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 HTR1FP30939 366 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 THBS2P35442 1172 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 RAD52P43351 418 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 MRPS34P82930 218 aaKnown RBP6.87□□□□□ -1.31
SCN1A-207ENST00000507401 PLP2Q04941 152 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 CHRFAM7AQ494W8 412 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 ALG10Q5BKT4 473 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 THEM4Q5T1C6 240 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 FAM27BQ5VT28 67 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 ZNF626Q68DY1 528 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 C1orf94Q6P1W5 598 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 PGBD2Q6P3X8 592 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 SFXN4Q6P4A7 337 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 PODNL1Q6PEZ8 512 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 TMPRSS11FQ6ZWK6 438 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 SLC16A14Q7RTX9 510 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 C1orf174Q8IYL3 243 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 SAMD12Q8N8I0 201 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 OR4K5Q8NGD3 323 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 PFN4Q8NHR9 129 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 RAB40AQ8WXH6 277 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 TSNAXQ99598 290 aaKnown RBP6.87□□□□□ -1.31
SCN1A-207ENST00000507401 GINS4Q9BRT9 223 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 FUZQ9BT04 418 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 ALG12Q9BV10 488 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 FNDC11Q9BVV2 318 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 ALX4Q9H161 411 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-207ENST00000507401 MAN2C1Q9NTJ4 1040 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 LPAR3Q9UBY5 353 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 GPR160Q9UJ42 338 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 CDC42EP3Q9UKI2 254 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 POMT1Q9Y6A1 747 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 MXRA5Q9NR99 2828 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 COL6A5A8TX70 2615 aa6.87□□□□□ -1.31
SCN1A-207ENST00000507401 A6NIZ1 184 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 G3V3Q6 166 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 UBE2CO00762 179 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 FFAR1O14842 300 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SGCEO43556 437 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 EIF4EBP3O60516 100 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 PLATP00750 562 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 IGHMP01871 453 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MT-ND5P03915 603 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ALDOBP05062 364 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MELTFP08582 738 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 IGFBP1P08833 259 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ADRA2AP08913 450 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MMP7P09237 267 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 FBP1P09467 338 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 TACSTD2P09758 323 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 PATE4P0C8F1 98 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 FAM157CP0CG43 387 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 LIMS3P0CW19 117 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 LIMS4P0CW20 117 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 IGHV4-31P0DP07 118 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SLC2A1P11166 492 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 RPL35P42766 123 aaKnown RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 TMEM33P57088 247 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SELENOVP59797 346 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 RAP1BP61224 184 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 RPL27P61353 136 aaKnown RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 RAP1AP62834 184 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ACTC1P68032 377 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ACTA1P68133 377 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MRPS11P82912 194 aaKnown RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 DEFA5Q01523 94 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 GGTLC2Q14390 218 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MELKQ14680 651 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 GINS1Q14691 196 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ZMYND11Q15326 602 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 UBE2NLQ5JXB2 153 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 RPL13AP3Q6NVV1 102 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SLC25A47Q6Q0C1 308 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 UNQ6126/PRO20091Q6UXV3 157 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 MBOAT2Q6ZWT7 520 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 KRT77Q7Z794 578 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ZCCHC24Q8N2G6 241 aaKnown RBP6.86□□□□□ -1.31
SCN1A-207ENST00000507401 LRRC75AQ8NAA5 344 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SLC30A7Q8NEW0 376 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 NOXO1Q8NFA2 376 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 BEST4Q8NFU0 473 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 OR52J3Q8NH60 311 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 SPATA3Q8NHX4 192 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 FGFBP3Q8TAT2 258 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 ZNF519Q8TB69 540 aa6.86□□□□□ -1.31
SCN1A-207ENST00000507401 CCDC107Q8WV48 283 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms