RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CEP19Q96LK0 163 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 GAL3ST1Q99999 423 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 NRIP2Q9BQI9 281 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 CENPOQ9BU64 300 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 REG4Q9BYZ8 158 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 CNTD2Q9H8S5 307 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 SMURF1Q9HCE7 757 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 ING4Q9UNL4 249 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 GSTK1Q9Y2Q3 226 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 CSMD1Q96PZ7 3565 aa9.98□□□□□ -0.81
CUX1-210ENST00000497815 DYSFO75923 2080 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 TRAV38-1A0A0B4J264 116 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 MEGF11A6BM72 1044 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 H7C1Q1 480 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 SMAD7O15105 426 aaKnown RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 CDRT1O95170 752 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 GYPAP02724 150 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 TFF1P04155 84 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 USF1P22415 310 aaPredicted RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 TGFBR1P36897 503 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 CFHR2P36980 270 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 PTGFRP43088 359 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 RPL5P46777 297 aaKnown RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 NPBWR2P48146 333 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 MXD1Q05195 221 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 MICBQ29980 383 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 ZNF404Q494X3 552 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 GLT8D1Q68CQ7 371 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 C1QL2Q7Z5L3 287 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 LRRC28Q86X40 367 aaPredicted RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 CIARTQ8N365 385 aaPredicted RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 OR10K1Q8NGX5 313 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 CLDND2Q8NHS1 167 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 EMG1Q92979 244 aaKnown RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 KCTD7Q96MP8 289 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 S100A13Q99584 98 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 GFI1Q99684 422 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 TMEM246Q9BRR3 403 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 TMEM165Q9HC07 324 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 RBFOX1Q9NWB1 397 aaKnown RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 PCDHB10Q9UN67 800 aa9.97□□□□□ -0.81
CUX1-210ENST00000497815 MRPS28Q9Y2Q9 187 aaKnown RBP9.97□□□□□ -0.81
CUX1-210ENST00000497815 CHD3Q12873 2000 aaKnown RBP9.96□□□□□ -0.81
CUX1-210ENST00000497815 TRAV1-2A0A0B4J238 106 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 PDCD5O14737 125 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 NOS1APO75052 506 aaPredicted RBP9.96□□□□□ -0.82
CUX1-210ENST00000497815 SFTPBP07988 381 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 PRKACAP17612 351 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 IL2RGP31785 369 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 OR10A3P58181 314 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 RSU1Q15404 277 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 SMIM21Q3B7S5 101 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 TEX36Q5VZQ5 186 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 AWAT2Q6E213 333 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 GLIPR1L1Q6UWM5 242 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 LYPD2Q6UXB3 125 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 ACP7Q6ZNF0 438 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 FAM90A1Q86YD7 464 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 SAXO1Q8IYX7 474 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 MUC20Q8N307 709 aaPredicted RBP9.96□□□□□ -0.82
CUX1-210ENST00000497815 ZSCAN4Q8NAM6 433 aaPredicted RBP9.96□□□□□ -0.82
CUX1-210ENST00000497815 OR4D6Q8NGJ1 314 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 NAA50Q9GZZ1 169 aaKnown RBP9.96□□□□□ -0.82
CUX1-210ENST00000497815 PLGRKTQ9HBL7 147 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 NLKQ9UBE8 527 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 IL36RNQ9UBH0 155 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 OR14J1Q9UGF5 321 aa9.96□□□□□ -0.82
CUX1-210ENST00000497815 OR2AT4A6NND4 320 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 CEACAM18A8MTB9 384 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 KDM4BO94953 1096 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 HTR3BO95264 441 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 ACAA1P09110 424 aaPredicted RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 CLEC2LP0C7M8 214 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 RPS2P15880 293 aaKnown RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 MUC1P15941 1255 aaPredicted RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 RAB3BP20337 219 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 SERPINA2P20848 420 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 DUSP1P28562 367 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 SDC2P34741 201 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 GABRA2P47869 451 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 MTNR1BP49286 362 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 CEBPDP49716 269 aaPredicted RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 CAV3P56539 151 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 ERVK11-1P61568 191 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 NCS1P62166 190 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 P2RY14Q15391 338 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 KCNJ8Q15842 424 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 SLC22A6Q4U2R8 563 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 TMEM155Q4W5P6 130 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 HES5Q5TA89 166 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 GDPGP1Q6ZNW5 385 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 SLC16A12Q6ZSM3 486 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 LYPD6Q86Y78 171 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 CLVS1Q8IUQ0 354 aaPredicted RBP9.95□□□□□ -0.82
CUX1-210ENST00000497815 CDH26Q8IXH8 852 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 Q8IYB0 196 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 FAM58AQ8N1B3 248 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 SPICQ8N5J4 248 aa9.95□□□□□ -0.82
CUX1-210ENST00000497815 PXT1Q8NFP0 134 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms